Evidence map›Paper›PMID 30201968›Full record

ArticleNature communications2018

Structure of the herpes simplex virus type 2 C-capsid with capsid-vertex-specific component.

Jialing Wang, Shuai Yuan, Dongjie Zhu, Hao Tang, Nan Wang, Wenyuan Chen, Qiang Gao, Yuhua Li, Junzhi Wang, Hongrong Liu and 3 more

Open access · greenAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 32 citations in OpenAlex.

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  14. Structures of pseudorabies virus capsids.Nature communications · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 1 country.

Jialing WangNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China.
Shuai YuanNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China.
Dongjie ZhuNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China.ORCID http://orcid.org/0000-0002-5052-1782
Hao TangCollege of Physics and Information Science, Synergetic Innovation Center for Quantum Effects and Applications, Key Laboratory of Low-dimensional Quantum Structures, and Quantum Control of the Ministry of Education, Hunan Normal University, Changsha, 410008, China.
Nan WangNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China.
Wenyuan ChenCollege of Physics and Information Science, Synergetic Innovation Center for Quantum Effects and Applications, Key Laboratory of Low-dimensional Quantum Structures, and Quantum Control of the Ministry of Education, Hunan Normal University, Changsha, 410008, China.
Qiang GaoNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China.
Yuhua LiNational Institutes for Food and Drug Control, No. 2, Tiantanxili, Beijing, 100050, China.
Junzhi WangNational Institutes for Food and Drug Control, No. 2, Tiantanxili, Beijing, 100050, China.
Hongrong LiuCollege of Physics and Information Science, Synergetic Innovation Center for Quantum Effects and Applications, Key Laboratory of Low-dimensional Quantum Structures, and Quantum Control of the Ministry of Education, Hunan Normal University, Changsha, 410008, China. hrliu@hunnu.edu.cn.
Xinzheng ZhangNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China. xzzhang@ibp.ac.cn.
Zihe RaoNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China. raozh@tsinghua.edu.cn.
Xiangxi WangNational Laboratory of Macromolecules, Institute of Biophysics, Chinese Academy of Science, Beijing, 100101, China. xiangxi@ibp.ac.cn.ORCID http://orcid.org/0000-0003-0635-278X
Institute of Biophysics · CNHunan Normal University · CNUniversity of Chinese Academy of Sciences · CNNational Institutes for Food and Drug Control · CNSinovac Biotech · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herpes simplex viruses (HSVs) cause human oral and genital ulcer diseases. Patients with HSV-2 have a higher risk of acquiring a human immunodeficiency virus infection. HSV-2 is a member of the α-herpesvirinae subfamily that together with the β- and γ-herpesvirinae subfamilies forms the Herpesviridae family. Here, we report the cryo-electron microscopy structure of the HSV-2 C-capsid with capsid-vertex-specific component (CVSC) that was determined at 3.75 Å using a block-based reconstruction strategy. We present atomic models of multiple conformers for the capsid proteins (VP5, VP23, VP19C, and VP26) and CVSC. Comparison of the HSV-2 homologs yields information about structural similarities and differences between the three herpesviruses sub-families and we identify α-herpesvirus-specific structural features. The hetero-pentameric CVSC, consisting of a UL17 monomer, a UL25 dimer and a UL36 dimer, is bound tightly by a five-helix bundle that forms extensive networks of subunit contacts with surrounding capsid proteins, which reinforce capsid stability.

Indexed as

Virus AssemblyAnimalsCapsidCapsid ProteinsChlorocebus aethiopsCryoelectron MicroscopyDNA, ViralHerpesvirus 2, HumanImage Processing, Computer-AssistedProtein Structure, SecondaryVero CellsVirionCapsid ProteinsDNA, Viral

Identifiers

PMID30201968
PMCPMC6131487
OpenAlexW2891569810

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.