Evidence map›Paper›PMID 30201897›Full record

ArticleInternational journal of molecular sciences2018

Comparative In Vitro and In Silico Analysis of the Selectivity of Indirubin as a Human Ah Receptor Agonist.

Samantha C Faber, Anatoly A Soshilov, Sara Giani Tagliabue, Laura Bonati, Michael S Denison

Open access · goldAbstract readComparative Study
In one paragraph

Article in International journal of molecular sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 37 citations in OpenAlex.

  1. Article
  2. Article
  3. The modern human aryl hydrocarbon receptor is more active when ancestralized by genome editing.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Article
  11. Article
  12. AhR and Cancer: From Gene Profiling to Targeted Therapy.International journal of molecular sciences · 2021
    Review
  13. Article
  14. Article
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Samantha C FaberDepartment of Environmental Toxicology, University of California, Davis, CA 95616, USA. scfaber@unc.edu.
Anatoly A SoshilovDepartment of Environmental Toxicology, University of California, Davis, CA 95616, USA. soshilov@gmail.com.
Sara Giani TagliabueDepartment of Earth and Environmental Sciences, University of Milano-Bicocca, Milan 20126, Italy. s.gianitagliabue@campus.unimib.it.ORCID 0000-0002-2393-2527
Laura BonatiDepartment of Earth and Environmental Sciences, University of Milano-Bicocca, Milan 20126, Italy. laura.bonati@unimib.it.ORCID 0000-0003-3028-0368
Michael S DenisonDepartment of Environmental Toxicology, University of California, Davis, CA 95616, USA. msdenison@ucdavis.edu.
University of California, Davis · USUniversity of Milano-Bicocca · IT

Funding

Workshop on Environmental Technology Transfer and EntrepreneurshipP42ES004699 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI HAMMOCK, BRUCE D · 1987 to 2021
$50.1M
RECOMBINANT DETECTION SYSTEMS FOR DIOXIN LIKE CHEMICALSR01ES007685 · NIEHS · UNIVERSITY OF CALIFORNIA DAVIS · PI DENISON, MICHAEL STEVEN · 1995 to 2019
$4.7M
National Institutes of Health P42ES004699National Institutes of Health R01ES07685National Institutes of Health T32ES007059NIEHS NIH HHS P42 ES004699NIEHS NIH HHS R01 ES007685
6 · The paper itself

Abstract

The aryl hydrocarbon receptor (AhR) is a ligand-dependent transcription factor that modulates gene expression following its binding and activation by structurally diverse chemicals. Species differences in AhR functionality have been observed, with the mouse AhR (mAhR) and human AhR (hAhR) exhibiting significant differences in ligand binding, coactivator recruitment, gene expression and response. While the AhR agonist indirubin (IR) is a more potent activator of hAhR-dependent gene expression than the prototypical ligand 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), it is a significantly less potent activator of the mAhR. DNA binding analysis confirmed the greater potency/efficacy of IR in stimulating transformation/DNA binding of the hAhR in vitro and domain-swapping experiments demonstrated that the enhanced response to IR was primarily due to the hAhR ligand binding domain (LBD). Site-directed mutagenesis and functional analysis studies revealed that mutation of H326 and A349 in the mAhR LBD to the corresponding residues in the hAhR LBD significantly increased the potency of IR. Since these mutations had no significant effect on ligand binding, these residues likely contribute to an enhanced efficiency of transformation/DNA binding by IR-bound hAhR. Molecular docking to mAhR LBD homology models further elucidated the different roles of the A375V mutation in TCDD and IR binding, as revealed by [³H]TCDD competitive binding results. These results demonstrate the differential binding of structurally diverse ligands within the LBD of a given AhR and confirm that amino acid differences within the LBD of AhRs contribute to significant species differences in ligand response.

Indexed as

AnimalsBasic Helix-Loop-Helix ProteinsBinding SitesComputer SimulationHumansIndolesIn Vitro TechniquesMiceModels, MolecularMolecular Docking SimulationMutagenesis, Site-DirectedPolychlorinated DibenzodioxinsProtein BindingProtein Structure, SecondaryReceptors, Aryl HydrocarbonSpecies SpecificityAHR protein, humanAhr protein, mouseBasic Helix-Loop-Helix ProteinsindirubinIndolesPolychlorinated DibenzodioxinsReceptors, Aryl HydrocarbonAhRAh receptorindirubinin silicoin vitroTCDD

Identifiers

PMID30201897
PMCPMC6165432
OpenAlexW2891255649

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.