ArticlePhilosophical transactions of the Royal Society of London. Series B, Biological sciences2018
Geppetto: a reusable modular open platform for exploring neuroscience data and models.
Article in Philosophical transactions of the Royal Society of London. Series B, Biological sciences, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
17 citing papers in PubMed.
- Exploring neurodevelopment via spatiotemporal collation of anatomical networks with NeuroSC.eLife · 2025Article
- NeuroSC: Exploring Neurodevelopment via Spatiotemporal Collation of Anatomical Networks.bioRxiv : the preprint server for biology · 2025Article
- A Visual Interface for Exploring Hypotheses About Neural Circuits.IEEE transactions on visualization and computer graphics · 2024Article
- Mind In Vitro Platforms: Versatile, Scalable, Robust, and Open Solutions to Interfacing with Living Neurons.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2024Article
- NeuroML-DB: Sharing and characterizing data-driven neuroscience models described in NeuroML.PLoS computational biology · 2023Article
- Learning the dynamics of realistic models of C. elegans nervous system with recurrent neural networks.Scientific reports · 2023Article
- Virtual Fly Brain-An interactive atlas of theFrontiers in physiology · 2023Article
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- Octopaminergic neurons have multiple targets inLearning & memory (Cold Spring Harbor, N.Y.) · 2021Article
- An efficient analytical reduction of detailed nonlinear neuron models.Nature communications · 2020Article
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- Neural Interactome: Interactive Simulation of a Neuronal System.Frontiers in computational neuroscience · 2019Article
- c302: a multiscale framework for modelling the nervous system ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018Article
- OpenWorm: overview and recent advances in integrative biological simulation ofPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018Review
- Connectome to behaviour: modellingPhilosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018Article
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Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
9 authors.
Funding
Abstract
Geppetto is an open-source platform that provides generic middleware infrastructure for building both online and desktop tools for visualizing neuroscience models and data and managing simulations. Geppetto underpins a number of neuroscience applications, including Open Source Brain (OSB), Virtual Fly Brain (VFB), NEURON-UI and NetPyNE-UI. OSB is used by researchers to create and visualize computational neuroscience models described in NeuroML and simulate them through the browser. VFB is the reference hub for
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.