Evidence map›Paper›PMID 30201041›Full record

ArticleBMC research notes2018

Detection of Streptococcus pneumoniae from culture-negative dried blood spots by real-time PCR in Nigerian children with acute febrile illness.

Pui-Ying Iroh Tam, Nelmary Hernandez-Alvarado, Mark R Schleiss, Amy J Yi, Fatimah Hassan-Hanga, Chuma Onuchukwu, Dominic Umoru, Stephen K Obaro

Open access · goldAbstract read
In one paragraph

Article in BMC research notes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 10 citations in OpenAlex.

  1. Article
  2. Article
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  4. Rapid, Simple, and Highly Specific Detection ofFrontiers in cellular and infection microbiology · 2022
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  6. Impact of Laboratory Methods and Gene Targets on Detection ofReports of biochemistry & molecular biology · 2020
    Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 4 countries.

Pui-Ying Iroh TamDivision of Pediatric Infectious Diseases and Immunology, University of Minnesota, Minneapolis, MN, USA. irohtam@mlw.mw.ORCID http://orcid.org/0000-0002-3682-8892
Nelmary Hernandez-AlvaradoDivision of Pediatric Infectious Diseases and Immunology, University of Minnesota, Minneapolis, MN, USA.
Mark R SchleissDivision of Pediatric Infectious Diseases and Immunology, University of Minnesota, Minneapolis, MN, USA.
Amy J YiDivision of Pediatric Infectious Diseases and Immunology, University of Minnesota, Minneapolis, MN, USA.
Fatimah Hassan-HangaAminu Kano Teaching Hospital, Kano, Nigeria.
Chuma OnuchukwuFederal Medical Center, Keffi, Nasarawa, Nigeria.
Dominic UmoruNyanya General Hospital, Abuja, Nigeria.
Stephen K ObaroAminu Kano Teaching Hospital, Kano, Nigeria.
University of Minnesota · USAminu Kano Teaching Hospital · NGFederal Medical Centre · NGNational Hospital Abuja · NGUniversity of Abuja Teaching Hospital · NG

Funding

Viral Immunomodulation and Rational CMV Vaccine DesignR01HD044864 · NICHD · UNIVERSITY OF MINNESOTA TWIN CITIES · PI GEBALLE, ADAM P., MCVOY, MICHAEL A · 2003 to 2015
$4.5M
Global Genomic and Proteomic Profiling of African Children with Typhoid FeverR01AI097493 · NIAID · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI OBARO, STEPHEN · 2012 to 2015
$1.6M
Bill and Melinda Gates Foundation OPP1034619ISPPD Robert Austrian GrantNational Institutes of Health AI097493National Institutes of Health (US) HD044864NIAID NIH HHS R01 AI097493NICHD NIH HHS R01 HD044864
6 · The paper itself

Abstract

objectivesAcute febrile illness is a common cause of hospital admission, and its associated infectious causes, of which a key bacterial causative agent is Streptococcus pneumoniae, contribute to substantial morbidity and mortality. We sought to evaluate the utility of real-time (rt)-PCR on dried blood spots (DBS) for diagnosis of S. pneumoniae in acute febrile illness among children presenting to hospitals in Nigeria. We previously described preliminary results in a sample of 537 patients. Here we present data from a larger collection of 1038 patients.

resultsUsing rt-PCR for Streptococcus pneumoniae on 1038 dried blood spots from children prospectively enrolled with acute febrile illness, including 79 healthy controls, we detected pneumococcal DNA in nine of 15 blood culture-positive specimens, one culture-negative specimen from a high-risk group, a culture-confirmed non-pneumococcal specimen and a healthy control. Six culture-positive isolates (40%) were negative. Sensitivity was 60%, specificity 99.7%, positive predictive value 75% and negative predictive value 99.4%. Rt-PCR of DBS has limited sensitivity in blood specimens from acute febrile illness in children.

Indexed as

Real-Time Polymerase Chain ReactionBelgiumChild, PreschoolFeverHumansInfantNigeriaSensitivity and SpecificityStreptococcus pneumoniaeBloodstream infectionsChildrenDried blood spotFebrile illnessMolecular diagnosticsPneumococcus

Identifiers

PMID30201041
PMCPMC6131910
OpenAlexW2890009502

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.