Evidence map›Paper›PMID 30200873›Full record

ArticleBMC genomics2018

Changing expression profiles of long non-coding RNAs, mRNAs and circular RNAs in ethylene glycol-induced kidney calculi rats.

Yanan Cao, Xiaowei Gao, Yue Yang, Zhi Ye, E Wang, Zhitao Dong

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
  2. miR-148b-5p regulates hypercalciuria and calcium-containing nephrolithiasis.Cellular and molecular life sciences : CMLS · 2024
    Article
  3. Review
  4. Noncoding RNA, friend or foe for nephrolithiasis?Frontiers in cell and developmental biology · 2024
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Role of Circular RNA in Kidney-Related Diseases.Frontiers in pharmacology · 2021
    Article
  12. Article
  13. Article
  14. Circular RNA in renal diseases.Journal of cellular and molecular medicine · 2020
    Review
  15. UpregulatedOncoTargets and therapy · 2020
    Article
  16. Article
  17. Review
  18. Long Non-Coding RNAs in Kidney Disease.International journal of molecular sciences · 2019
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Yanan CaoDepartment of Anesthesiology, Xiangya Hospital, Central South University, Xiangya Road 87#, Changsha, Hunan, 410008, People's Republic of China.
Xiaowei GaoDepartment of Anesthesiology, Xiangya Hospital, Central South University, Xiangya Road 87#, Changsha, Hunan, 410008, People's Republic of China.
Yue YangDepartment of Anesthesiology, Xiangya Hospital, Central South University, Xiangya Road 87#, Changsha, Hunan, 410008, People's Republic of China.
Zhi YeDepartment of Anesthesiology, Xiangya Hospital, Central South University, Xiangya Road 87#, Changsha, Hunan, 410008, People's Republic of China.
E WangDepartment of Anesthesiology, Xiangya Hospital, Central South University, Xiangya Road 87#, Changsha, Hunan, 410008, People's Republic of China.
Zhitao DongDepartment of Urology, Second Xiangya Hospital, Central South University, Changsha, Hunan, 410011, People's Republic of China. zhitaodong@csu.edu.cn.ORCID http://orcid.org/0000-0002-8563-2247
Central South University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundTo explore long non-coding RNA (lncRNA), mRNA and circular RNA (circRNA) expression profiles and their biological functions in the pathogenesis of kidney stones in ethylene glycol-induced urolithiasis rats.

resultsThe expression of 1440 lncRNAs, 2455 mRNAs and 145 circRNAs was altered in the kidneys of urolithiasis rats. GO and KEGG biological pathway analysis were performed to predict the functions of differentially expressed lncRNAs, circRNAs and co-expressed potential targeting genes. Co-expression networks of lncRNA-mRNA and circRNA-miRNA were constructed based on correlation analysis between differentially expressed RNAs. mRNAs coexpressed with lncRNAs were involved in many kidney diseases, e.g., Ephb6 was associated with the reabsorption ability of the kidney. Arl5b was associated with the dynamic changes in the podocyte foot process in podocyte injury. miRNAs co-expressed with circRNAs, such as rno-miR-138-5p and rno-miR-672-5p, have been proven to be functional in hypercalciuria urolithiasis.

conclusionThe expression profile provided a systematic perspective on the potential functions of lncRNAs and circRNAs in the pathogenesis of kidney stones. Differentially expressed lncRNAs and circRNAs might serve as treatment targets for kidney stones.

Indexed as

AnimalsEthylene GlycolGene OntologyKidney CalculiMaleRatsRats, Sprague-DawleyRNARNA, CircularRNA, Long NoncodingRNA, MessengerSequence Analysis, RNATranscriptomeEthylene GlycolRNARNA, CircularRNA, Long NoncodingRNA, MessengerCalcium oxalatecircRNAsKidney stoneLong non-coding RNAsmRNAs

Identifiers

PMID30200873
PMCPMC6131827
OpenAlexW2890280495

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.