Evidence map›Paper›PMID 30200754›Full record

ArticleACS chemical neuroscience2019

Bypassing Glutamic Acid Decarboxylase 1 (Gad1) Induced Craniofacial Defects with a Photoactivatable Translation Blocker Morpholino.

Matthew J O'Connor, Lindsey L Beebe, Davide Deodato, Rebecca E Ball, A Tyler Page, Ariel J VanLeuven, Kyle T Harris, Sungdae Park, Vani Hariharan, James D Lauderdale and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in ACS chemical neuroscience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.7field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Conditionally Activated ("Caged") Oligonucleotides.Molecules (Basel, Switzerland) · 2021
    Review
  10. Caspase-Activated Oligonucleotide Probe.Bioconjugate chemistry · 2020
    Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 2 countries.

Matthew J O'ConnorNew York University Abu Dhabi , PO Box 129188, Abu Dhabi , United Arab Emirates.
Lindsey L BeebeDepartment of Genetics , University of Georgia , Athens , Georgia 30602 , United States.
Davide DeodatoNew York University Abu Dhabi , PO Box 129188, Abu Dhabi , United Arab Emirates.
Rebecca E BallDepartment of Cellular Biology , University of Georgia , Athens , Georgia 30602 , United States.
A Tyler PageDepartment of Cellular Biology , University of Georgia , Athens , Georgia 30602 , United States.
Ariel J VanLeuvenDepartment of Cellular Biology , University of Georgia , Athens , Georgia 30602 , United States.
Kyle T HarrisDepartment of Chemistry , University of Georgia , Athens , Georgia 30602 United States.
Sungdae ParkDepartment of Genetics , University of Georgia , Athens , Georgia 30602 , United States.
Vani HariharanDepartment of Cellular Biology , University of Georgia , Athens , Georgia 30602 , United States.
James D LauderdaleDepartment of Cellular Biology , University of Georgia , Athens , Georgia 30602 , United States.
Timothy M DoreNew York University Abu Dhabi , PO Box 129188, Abu Dhabi , United Arab Emirates.ORCID 0000-0002-3876-5012
University of Georgia · USNew York University Abu Dhabi · AE

Funding

CRCNS: Quantum of Network Dysfunction in Epilepsy-Understanding the Inhibitory RestraintR01NS090645 · NINDS · UNIVERSITY OF GEORGIA · PI LAUDERDALE, JAMES D · 2014 to 2018
$1.6M
Light Driven Tools for Developmental NeurophysiologyR01NS070159 · NINDS · UNIVERSITY OF GEORGIA · PI DORE, TIMOTHY M, LAUDERDALE, JAMES D · 2010 to 2014
$1.6M
NINDS NIH HHS R01 NS070159NINDS NIH HHS R01 NS090645
6 · The paper itself

Abstract

γ-Amino butyric acid (GABA) mediated signaling is critical in the central and enteric nervous systems, pancreas, lungs, and other tissues. It is associated with many neurological disorders and craniofacial development. Glutamic acid decarboxylase (GAD) synthesizes GABA from glutamate, and knockdown of the gad1 gene results in craniofacial defects that are lethal in zebrafish. To bypass this and enable observation of the neurological defects resulting from knocking down gad1 expression, a photoactivatable morpholino oligonucleotide (MO) against gad1 was prepared by cyclization with a photocleavable linker rendering the MO inactive. The cyclized MO was stable in the dark and toward degradative enzymes and was completely linearized upon brief exposure to 405 nm light. In the course of investigating the function of the ccMOs in zebrafish, we discovered that zebrafish possess paralogous gad1 genes, gad1a and gad1b. A gad1b MO injected at the 1-4 cell stage caused severe morphological defects in head development, which could be bypassed, enabling the fish to develop normally, if the fish were injected with a photoactivatable, cyclized gad1b MO and grown in the dark. At 1 day post fertilization (dpf), light activation of the gad1b MO followed by observation at 3 and 7 dpf led to increased and abnormal electrophysiological brain activity compared to wild type animals. The photocleavable linker can be used to cyclize and inactivate any MO, and represents a general strategy to parse the function of developmentally important genes in a spatiotemporal manner.

Indexed as

AnimalsCraniofacial AbnormalitiesGlutamate DecarboxylaseMicroinjectionsMorpholinosZebrafishGlutamate Decarboxylaseglutamate decarboxylase 1Morpholinos(8-bromo-7-hydroxyquinolin-2-yl)methyl(8-cyano-7-hydroxyquinolin-2-yl)methylGABAergic signalingGlutamic acid decarboxylasephotoactivated morpholinoγ-amino butyric acid

Identifiers

PMID30200754
PMCPMC6337688
OpenAlexW2891300466

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.