Evidence map›Paper›PMID 30198905›Full record

ArticleThe Journal of clinical investigation2018

No recovery of replication-competent HIV-1 from human liver macrophages.

Abraham J Kandathil, Sho Sugawara, Ashish Goyal, Christine M Durand, Jeffrey Quinn, Jaiprasath Sachithanandham, Andrew M Cameron, Justin R Bailey, Alan S Perelson, Ashwin Balagopal

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 49 citations in OpenAlex.

  1. Trial
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  8. IFIH1 (MDA5) is required for innate immune detection of intron-containing RNA expressed from the HIV-1 provirus.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. HIV and liver disease: a comprehensive update.Topics in antiviral medicine · 2022
    Article
  16. Article
  17. Development of a NovelJournal of virology · 2021
    Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Abraham J KandathilDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Sho SugawaraDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Ashish GoyalTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Christine M DurandDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Jeffrey QuinnDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Jaiprasath SachithanandhamDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Andrew M CameronDepartment of Surgery, Johns Hopkins University, Baltimore, Maryland, USA.
Justin R BaileyDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Alan S PerelsonTheoretical Biology and Biophysics, Los Alamos National Laboratory, Los Alamos, New Mexico, USA.
Ashwin BalagopalDepartment of Medicine, Johns Hopkins University, Baltimore, Maryland, USA.
Johns Hopkins University · USLos Alamos National Laboratory · US

Funding

The Progression of Hepatitis C Among IDUs with HIVR01DA016078 · NIDA · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN, THOMAS, DAVID L · 2002 to 2016
$10.9M
Spatial Models of Intrahepatic Hepatitis C Virus Propagation in HumansR01AI116868 · NIAID · TRIAD NATIONAL SECURITY, LLC · PI ASHWIN BALAGOPAL, Ruy M Ribeiro · 2016 to 2026
$8.5M
Viral dynamics of rebound and control following early treatment of HIV/SIVP01AI131365 · NIAID · BOSTON COLLEGE · PI WHITNEY, JAMES BURTON · 2017 to 2021
$7.5M
Modeling Viral and T Lymphocyte DynamicsR01OD011095 · OD · TRIAD NATIONAL SECURITY, LLC · PI PERELSON, ALAN S · 2012 to 2024
$5.0M
Immune System Modeling/HIVR01AI028433 · NIAID · UNIVERSITY OF CALIF-LOS ALAMOS NAT LAB · PI PERELSON, ALAN S · 1990 to 2021
$3.7M
Kupffer Cells and HIV-1 PersistenceR56AI118445 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN · 2015 to 2015
$745k
HIV, Kupffer Cells, and HCV-related Liver FibrosisK08AI081544 · NIAID · JOHNS HOPKINS UNIVERSITY · PI BALAGOPAL, ASHWIN · 2009 to 2013
$644k
NIAID NIH HHS K08 AI081544NIAID NIH HHS P01 AI131365NIAID NIH HHS R01 AI028433NIAID NIH HHS R01 AI116868NIAID NIH HHS R56 AI118445NIDA NIH HHS R01 DA016078NIH HHS R01 OD011095
6 · The paper itself

Abstract

Long-lived HIV-1 reservoirs that persist despite antiretroviral therapy (ART) are a major impediment to a cure for HIV-1. We examined whether human liver macrophages (LMs), the largest tissue macrophage population, comprise an HIV-1 reservoir. We purified LMs from liver explants and included treatment with a T cell immunotoxin to reduce T cells to 1% or less. LMs were purified from 9 HIV-1-infected persons, 8 of whom were on ART (range 8-140 months). Purified LMs were stimulated ex vivo and supernatants from 6 of 8 LMs from persons on ART transmitted infection. However, HIV-1 propagation from LMs was not sustained except in LMs from 1 person taking ART for less than 1 year. Bulk liver sequences matched LM-derived HIV-1 in 5 individuals. Additional in vitro experiments undertaken to quantify the decay of HIV-1-infected LMs from 3 healthy controls showed evidence of infection and viral release for prolonged durations (>170 days). Released HIV-1 propagated robustly in target cells, demonstrating that viral outgrowth was observable using our methods. The t1/2 of HIV-1-infected LMs ranged from 3.8-55 days. These findings suggest that while HIV-1 persists in LMs during ART, it does so in forms that are inert, suggesting that they are defective or restricted with regard to propagation.

Indexed as

LiverMacrophagesVirus ReplicationAdultAnti-Retroviral AgentsFemaleHIV-1HIV InfectionsHumansMaleMiddle AgedTime FactorsAnti-Retroviral AgentsAIDS/HIVInfectious diseaseMacrophages

Identifiers

PMID30198905
PMCPMC6159970
OpenAlexW2891366061

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.