Evidence map›Paper›PMID 30197999›Full record

ArticleACS omega2018

Imaging pH Dynamics Simultaneously in Two Cellular Compartments Using a Ratiometric pH-Sensitive Mutant of mCherry.

Megha Rajendran, Benjamin Claywell, Emily P Haynes, Umi Scales, Chace K Henning, Mathew Tantama

Abstract read
In one paragraph

Article in ACS omega, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Megha RajendranDepartment of Chemistry, Institute for Integrative Neuroscience, and Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, 560 Oval Drive, P.O. Box 68, West Lafayette, Indiana 47907, United States.
Benjamin ClaywellDepartment of Chemistry, Institute for Integrative Neuroscience, and Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, 560 Oval Drive, P.O. Box 68, West Lafayette, Indiana 47907, United States.
Emily P HaynesDepartment of Chemistry, Institute for Integrative Neuroscience, and Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, 560 Oval Drive, P.O. Box 68, West Lafayette, Indiana 47907, United States.
Umi ScalesDepartment of Chemistry, Institute for Integrative Neuroscience, and Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, 560 Oval Drive, P.O. Box 68, West Lafayette, Indiana 47907, United States.
Chace K HenningDepartment of Chemistry, Institute for Integrative Neuroscience, and Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, 560 Oval Drive, P.O. Box 68, West Lafayette, Indiana 47907, United States.
Mathew TantamaDepartment of Chemistry, Institute for Integrative Neuroscience, and Institute of Inflammation, Immunology, and Infectious Disease, Purdue University, 560 Oval Drive, P.O. Box 68, West Lafayette, Indiana 47907, United States.

Funding

Optical Tools to Study Neuropeptide SignalingR21EY026425 · NEI · PURDUE UNIVERSITY · PI TANTAMA, MATHEW · 2015 to 2016
$454k
Genetically-encoded optical sensors to study purinergic signalingR21NS092010 · NINDS · PURDUE UNIVERSITY · PI TANTAMA, MATHEW · 2015 to 2016
$421k
NEI NIH HHS R21 EY026425NINDS NIH HHS R21 NS092010
6 · The paper itself

Abstract

The regulation of pH is essential for proper organelle function, and organelle-specific changes in pH often reflect the dynamics of physiological signaling and metabolism. For example, mitochondrial energy production depends on the proton gradient maintained between the alkaline mitochondrial matrix and neutral cytosol. However, we still lack a quantitative understanding of how pH dynamics are coupled between compartments and how pH gradients are regulated at organelle boundaries. Genetically encoded pH sensors are well suited to address this problem because they can be targeted to specific subcellular locations and they facilitate live, single-cell analysis. However, most of these pH sensors are derivatives of green and yellow fluorescent proteins that are not spectrally compatible for dual-compartment imaging. Therefore, there is a need for ratiometric red fluorescent protein pH sensors that enable quantitative multicolor imaging of spatially resolved pH dynamics. In this work, we demonstrate that the I158E/Q160A mutant of the red fluorescent protein mCherry is an effective ratiometric pH sensor. It has a p

Identifiers

PMID30197999
PMCPMC6120727

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.