Evidence map›Paper›PMID 30197919›Full record

ArticleData in brief2018

Data on whole genome sequencing of extrapulmonary tuberculosis clinical isolates from India.

Jayshree Advani, Kusum Sharma, Renu Verma, Oishi Chatterjee, Hitendra S Solanki, Aman Sharma, Subhash Varma, Manish Modi, Pallab Ray, Megha Sharma and 4 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in Data in brief, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Whole genome sequencing of drug resistanceLife science alliance · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

Jayshree AdvaniInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Kusum SharmaDepartment of Medical Microbiology, PGIMER, Chandigarh 160012, India.
Renu VermaInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Oishi ChatterjeeInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Hitendra S SolankiInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Aman SharmaDepartment of Internal Medicine, PGIMER, Chandigarh 160012, India.
Subhash VarmaDepartment of Internal Medicine, PGIMER, Chandigarh 160012, India.
Manish ModiDepartment of Neurology, PGIMER, Chandigarh 160012, India.
Pallab RayDepartment of Medical Microbiology, PGIMER, Chandigarh 160012, India.
Megha SharmaDepartment of Medical Microbiology, PGIMER, Chandigarh 160012, India.
M S DhillionDepartment of Orthopedics, PGIMER, Chandigarh 160012, India.
Akhilesh PandeyInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
Harsha GowdaInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.
T S Keshava PrasadInstitute of Bioinformatics, International Technology Park, Bangalore 560066, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This article describes the whole genome sequencing data from 5 extrapulmonary tuberculosis clinical isolates. The whole genome sequencing was carried out on Illumina MiSeq platform to identify single nucleotide variations (SNVs) associated with drug resistance. A total of 214 SNVs in the coding and promoter regions were identified in the whole genome sequencing analysis. Among the identified SNVs, 18 SNVs were identified in genes known to be associated with first and second line drug resistance. The data is related to the research article "Whole genome sequencing of

Identifiers

PMID30197919
PMCPMC6127979

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