Evidence map›Paper›PMID 30197877›Full record

ArticleProcesses (Basel, Switzerland)2018

ADAR Mediated RNA Editing Modulates MicroRNA Targeting in Human Breast Cancer.

Justin T Roberts, Dillon G Patterson, Valeria M King, Shivam V Amin, Caroline J Polska, Dominika Houserova, Aline Crucello, Emmaline C Barnhill, Molly M Miller, Timothy D Sherman and 1 more

Open access · goldAbstract read
In one paragraph

Article in Processes (Basel, Switzerland), 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 1 synthesis or guideline pooled it, 27 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Review
  4. Review
  5. Review
  6. The role of ADAR1 through and beyond its editing activity in cancer.Cell communication and signaling : CCS · 2024
    Review
  7. Article
  8. Article
  9. Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. ADAR1-Mediated RNA Editing and Its Role in Cancer.Frontiers in cell and developmental biology · 2022
    Review
  15. Review
  16. Review
  17. Review
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Justin T RobertsDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.ORCID 0000-0003-4433-1234
Dillon G PattersonDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Valeria M KingDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Shivam V AminDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Caroline J PolskaDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Dominika HouserovaDepartment of Pharmacology, USA College of Medicine, Mobile, AL 36688-0002, USA; dh1001@jagmail.southalabama.edu.
Aline CrucelloDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Emmaline C BarnhillDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Molly M MillerDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Timothy D ShermanDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.
Glen M BorchertDepartment of Biology, University of South Alabama, Mobile, AL 36688-0002, USA.ORCID 0000-0002-6182-7154
University of South Alabama · USUniversity of Mobile · US

Funding

Predoctoral Training Program in Molecular BiologyT32GM008730 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS, SCLAFANI, ROBERT A · 1999 to 2019
$3.3M
NIGMS NIH HHS T32 GM008730
6 · The paper itself

Abstract

RNA editing by RNA specific adenosine deaminase acting on RNA (ADAR) is increasingly being found to alter microRNA (miRNA) regulation. Editing of miRNA transcripts can affect their processing, as well as which messenger RNAs (mRNAs) they target. Further, editing of target mRNAs can also affect their complementarity to miRNAs. Notably, ADAR editing is often increased in malignancy with the effect of these RNA changes being largely unclear. In addition, numerous reports have now identified an array of miRNAs that directly contribute to various malignancies although the majority of their targets remain largely undefined. Here we propose that modulating the targets of miRNAs via mRNA editing is a frequent occurrence in cancer and an underappreciated participant in pathology. In order to more accurately characterize the relationship between these two regulatory processes, this study examined RNA editing events within mRNA sequences of two breast cancer cell lines (MCF-7 and MDA-MB-231) and determined whether or not these edits could modulate miRNA associations. Computational analyses of RNA-Seq data from these two cell lines identified over 50,000 recurrent editing sites within human mRNAs, and many of these were located in 3' untranslated regions (UTRs). When these locations were screened against the list of currently-annotated miRNAs we discovered that editing caused a subset (~9%) to have significant alterations to mRNA complementarity. One miRNA in particular, miR-140-3p, is known to be misexpressed in many breast cancers, and we found that mRNA editing allowed this miRNA to directly target the apoptosis inducing gene

Indexed as

ADARbreastcancerinosinemicroRNAmicroRNA targetingRNA editing

Identifiers

PMID30197877
PMCPMC6128407
OpenAlexW2800784697

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.