Evidence map›Paper›PMID 30197195›Full record

ArticleCell chemical biology2018

Small Molecule Targeting of Specific BAF (mSWI/SNF) Complexes for HIV Latency Reversal.

Christine A Marian, Mateusz Stoszko, Lili Wang, Matthew W Leighty, Elisa de Crignis, Chad A Maschinot, Jovylyn Gatchalian, Benjamin C Carter, Basudev Chowdhury, Diana C Hargreaves and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 57 citations in OpenAlex.

  1. Trial
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. The Role of SWI/SNF Complex in Bladder Cancer.Journal of cellular and molecular medicine · 2025
    Review
  10. Article
  11. Review
  12. Article
  13. Article
  14. Chromatin remodellers as therapeutic targets.Nature reviews. Drug discovery · 2024
    Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Christine A MarianDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 201 S. University St., West Lafayette, IN 47907, USA.
Mateusz StoszkoDepartment of Biochemistry, Erasmus University Medical Center, Ee634, P.O. Box 2040, 3000CA Rotterdam, the Netherlands.
Lili WangThe Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, MA 02142, USA.
Matthew W LeightyThe Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, MA 02142, USA.
Elisa de CrignisDepartment of Biochemistry, Erasmus University Medical Center, Ee634, P.O. Box 2040, 3000CA Rotterdam, the Netherlands.
Chad A MaschinotDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 201 S. University St., West Lafayette, IN 47907, USA.
Jovylyn GatchalianDepartment of Molecular and Cell Biology, Salk Institute for Biological Studies, 10010 N Torrey Pines Road, La Jolla, CA 92037, USA.
Benjamin C CarterDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 201 S. University St., West Lafayette, IN 47907, USA.
Basudev ChowdhuryDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 201 S. University St., West Lafayette, IN 47907, USA.
Diana C HargreavesDepartment of Molecular and Cell Biology, Salk Institute for Biological Studies, 10010 N Torrey Pines Road, La Jolla, CA 92037, USA.
Jeremy R DuvallThe Broad Institute of Harvard and MIT, 415 Main Street, Cambridge, MA 02142, USA.
Gerald R CrabtreeHHMI and the Departments of Developmental Biology and Pathology, Stanford University School of Medicine, 279 Campus Drive, Stanford, CA 94305, USA. Electronic address: crabtree@stanford.edu.
Tokameh MahmoudiDepartment of Biochemistry, Erasmus University Medical Center, Ee634, P.O. Box 2040, 3000CA Rotterdam, the Netherlands. Electronic address: t.mahmoudi@erasmusmc.nl.
Emily C DykhuizenDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, 201 S. University St., West Lafayette, IN 47907, USA. Electronic address: edykhui@purdue.edu.
Purdue University West Lafayette · USBroad Institute · USErasmus MC · NLSalk Institute for Biological Studies · USStanford Medicine · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI Andrea L Kasinski · 1985 to 2026
$43.4M
ATP-Dependent Chromatin Remodeling in Human MalignancyR01CA163915 · NCI · STANFORD UNIVERSITY · PI Gerald R. Crabtree · 2012 to 2026
$5.4M
Signaling by Calcineurin and NFAT in Axonal OutgrowthR01NS046789 · NINDS · STANFORD UNIVERSITY · PI CRABTREE, GERALD R. · 2003 to 2012
$3.4M
ATP-Dependent Chromatin Regulation in Neurodevelopment and Human DiseaseR37NS046789 · NINDS · STANFORD UNIVERSITY · PI CRABTREE, GERALD R. · 2013 to 2019
$2.7M
Epigenetic regulation of embryonic stem cells by ATP-dependent BAF chromatin remodeling complexesR35GM128943 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI HARGREAVES, DIANA CLARE · 2018 to 2022
$2.5M
The tumor suppressive role of PBRM1, the bromodomain-containing subunit of the PBAF chromatin remodeling complexU01CA207532 · NCI · PURDUE UNIVERSITY · PI DYKHUIZEN, EMILY CARLA · 2017 to 2021
$1.7M
Targeting Ovarian Cancer via Cooperative Oncogene InteractionsR00CA184043 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI HARGREAVES, DIANA CLARE · 2015 to 2017
$747k
Defining the role of BRD9-BAF in embryonic stem cell pluripotencyF32GM128377 · NIGMS · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI GATCHALIAN, JOVYLYN · 2018 to 2019
$120k
Screen for Small Molecule Inhibitors of ATP Dependent Chromatin RemodelingR03DA032469 · NIDA · STANFORD UNIVERSITY · PI CRABTREE, GERALD R. · 2011 to 2012
$79k
Howard Hughes Medical InstituteNCI NIH HHS P30 CA023168NCI NIH HHS R00 CA184043NCI NIH HHS R01 CA163915NCI NIH HHS U01 CA207532NIDA NIH HHS R03 DA032469NIGMS NIH HHS F32 GM128377NIGMS NIH HHS R35 GM128943NINDS NIH HHS R01 NS046789NINDS NIH HHS R37 NS046789
6 · The paper itself

Abstract

The persistence of a pool of latently HIV-1-infected cells despite combination anti-retroviral therapy treatment is the major roadblock for a cure. The BAF (mammalian SWI/SNF) chromatin remodeling complex is involved in establishing and maintaining viral latency, making it an attractive drug target for HIV-1 latency reversal. Here we report a high-throughput screen for inhibitors of BAF-mediated transcription in cells and the subsequent identification of a 12-membered macrolactam. This compound binds ARID1A-specific BAF complexes, prevents nucleosomal positioning, and relieves transcriptional repression of HIV-1. Through this mechanism, these compounds are able to reverse HIV-1 latency in an in vitro T cell line, an ex vivo primary cell model of HIV-1 latency, and in patient CD4+ T cells without toxicity or T cell activation. These macrolactams represent a class of latency reversal agents with unique mechanism of action, and can be combined with other latency reversal agents to improve reservoir targeting.

Indexed as

AnimalsCell LineChromosomal Proteins, Non-HistoneHigh-Throughput Screening AssaysHIV-1MiceSmall Molecule LibrariesTranscription FactorsTranscription, GeneticVirus LatencyChromosomal Proteins, Non-HistoneSmall Molecule LibrariesSWI-SNF-B chromatin-remodeling complexTranscription FactorsARID1ABAF complexchromatin remodeling inhibitorhigh-throughput screeningHIV-1 latencySWI/SNF

Identifiers

PMID30197195
PMCPMC6404985
OpenAlexW2891673054

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.