Evidence map›Paper›PMID 30195940›Full record

ArticleBiophysical journal2018

Multiplex Single-Molecule DNA Barcoding Using an Oligonucleotide Ligation Assay.

Ivo Severins, Malwina Szczepaniak, Chirlmin Joo

Abstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Review
  2. Review
  3. BRET-based biosensors for SARS-CoV-2 oligonucleotide detection.Frontiers in bioengineering and biotechnology · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ivo SeverinsKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, Delft, The Netherlands.
Malwina SzczepaniakKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, Delft, The Netherlands. Electronic address: malwina.szczepaniak@gmail.com.
Chirlmin JooKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, Delft, The Netherlands. Electronic address: c.joo@tudelft.nl.

Funding

European Research Council 309509
6 · The paper itself

Abstract

Detection of specific nucleic acid sequences is invaluable in biological studies such as genetic disease diagnostics and genome profiling. Here, we developed a highly sensitive and specific detection method that combines an advanced oligonucleotide ligation assay with multicolor single-molecule fluorescence. We demonstrated that under our experimental conditions, 7-nucleotide long DNA barcodes have the optimal short length to ascertain specificity while being long enough for sufficient ligation. Using four spectrally separated fluorophores to label DNA barcodes, we simultaneously distinguished four DNA target sequences differing by only a single nucleotide. Our single-molecule approach will allow for accurate identification of low-abundance molecules without the need for target DNA preamplification.

Indexed as

Base SequenceBiosensing TechniquesDNA ProbesFluorescenceLab-On-A-Chip DevicesNucleic Acid Amplification TechniquesOligonucleotidesPolymorphism, Single NucleotideDNA ProbesOligonucleotides

Identifiers

PMID30195940
PMCPMC6139880

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.