Evidence map›Paper›PMID 30194383›Full record

ArticleNature communications2018

Mapping molecular landmarks of human skeletal ontogeny and pluripotent stem cell-derived articular chondrocytes.

Gabriel B Ferguson, Ben Van Handel, Maxwell Bay, Petko Fiziev, Tonis Org, Siyoung Lee, Ruzanna Shkhyan, Nicholas W Banks, Mila Scheinberg, Ling Wu and 11 more

Abstract readComparative Study
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Gabriel B FergusonDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Ben Van HandelDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Maxwell BayDepartment of Stem Cell Research and Regenerative Medicine, USC, Los Angeles, CA, 90033, USA.
Petko FizievBioinformatics Interdepartmental Program, UCLA, Los Angeles, CA, 90095, USA.
Tonis OrgDepartment of Molecular, Cell and Developmental Biology, UCLA, Los Angeles, CA, 90095, USA.
Siyoung LeeDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Ruzanna ShkhyanDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Nicholas W BanksDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Mila ScheinbergDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Ling WuInVitro Cell Research, LLC, Cockeysville, MD, 21030, USA.
Biagio SaittaDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
Joseph ElphingstoneDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA.
A Noelle LarsonDepartments of Orthopedic Surgery & Biochemistry and Molecular Biology, Center of Regenerative Medicine, Mayo Clinic, Rochester, MN, 55905, USA.
Scott M RiesterDepartments of Orthopedic Surgery & Biochemistry and Molecular Biology, Center of Regenerative Medicine, Mayo Clinic, Rochester, MN, 55905, USA.
April D PyleEli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research at UCLA, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0001-6122-1649
Nicholas M BernthalDepartment of Orthopaedic Surgery, David Geffen School of Medicine, UCLA, Los Angeles, CA, 90095, USA.
Hanna Ka MikkolaEli and Edythe Broad Center of Regenerative Medicine and Stem Cell Research at UCLA, Los Angeles, CA, 90095, USA.
Jason ErnstDepartment of Biological Chemistry, UCLA, Los Angeles, CA, 90095, USA.ORCID http://orcid.org/0000-0003-4026-7853
Andre J van WijnenDepartments of Orthopedic Surgery & Biochemistry and Molecular Biology, Center of Regenerative Medicine, Mayo Clinic, Rochester, MN, 55905, USA.ORCID http://orcid.org/0000-0002-4458-0946
Michael BonaguidiDepartment of Stem Cell Research and Regenerative Medicine, USC, Los Angeles, CA, 90033, USA.
Denis EvseenkoDepartment of Orthopaedic Surgery, Keck School of Medicine of USC, University of Southern California (USC), Los Angeles, CA, 90033, USA. evseenko@usc.edu.

Funding

Reprogramming and Directed Differentiation of Skeletal Muscle Cells from hPSCs.R01AR064327 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI April D Pyle · 2013 to 2026
$6.4M
DOCTORAL AND POST-DOCTORAL TRAINING IN CRANIOFACIAL BIOLOGYT90DE021982 · NIDCR · UNIVERSITY OF SOUTHERN CALIFORNIA · PI PAINE, MICHAEL LANSDELL · 2011 to 2025
$6.2M
GP130/STAT3 signalling in articular cartilage development and regenerationR01AR071734 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EVSEENKO, DENIS, LYONS, KAREN M. · 2018 to 2022
$3.0M
Mechanisms Underlying Neural Stem Cell Heterogeneity in the Adult HippocampusR00NS080913 · NINDS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI BONAGUIDI, MICHAEL · 2015 to 2017
$747k
Modifying and Delivering Antimicrobials to Prevent Orthopaedic Implant InfectionsK08AR069112 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BERNTHAL, NICHOLAS M. · 2016 to 2019
$704k
Generation of human chondroprogenitor cells for cartilage restorationK01AR061415 · NIAMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI EVSEENKO, DENIS · 2011 to 2015
$581k
NIAMS NIH HHS K01 AR061415NIAMS NIH HHS K08 AR069112NIAMS NIH HHS R01 AR064327NIAMS NIH HHS R01 AR071734NIDCR NIH HHS T90 DE021982NINDS NIH HHS R00 NS080913
6 · The paper itself

Abstract

Tissue-specific gene expression defines cellular identity and function, but knowledge of early human development is limited, hampering application of cell-based therapies. Here we profiled 5 distinct cell types at a single fetal stage, as well as chondrocytes at 4 stages in vivo and 2 stages during in vitro differentiation. Network analysis delineated five tissue-specific gene modules; these modules and chromatin state analysis defined broad similarities in gene expression during cartilage specification and maturation in vitro and in vivo, including early expression and progressive silencing of muscle- and bone-specific genes. Finally, ontogenetic analysis of freshly isolated and pluripotent stem cell-derived articular chondrocytes identified that integrin alpha 4 defines 2 subsets of functionally and molecularly distinct chondrocytes characterized by their gene expression, osteochondral potential in vitro and proliferative signature in vivo. These analyses provide new insight into human musculoskeletal development and provide an essential comparative resource for disease modeling and regenerative medicine.

Indexed as

ChondrogenesisAnimalsBiomarkersChondrocytesEpigenesis, GeneticFetal DevelopmentGene Expression ProfilingHistone CodeHumansMiceMyoblastsOsteoblastsSequence Analysis, RNASwineTenocytesTranscription, GeneticBiomarkers

Identifiers

PMID30194383
PMCPMC6128860

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.