Evidence map›Paper›PMID 30194316›Full record

ArticleScientific reports2018

X-ray Fluorescence Nanotomography of Single Bacteria with a Sub-15 nm Beam.

Tiffany W Victor, Lindsey M Easthon, Mingyuan Ge, Katherine H O'Toole, Randy J Smith, Xiaojing Huang, Hanfei Yan, Karen N Allen, Yong S Chu, Lisa M Miller

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
6.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 37 citations in OpenAlex.

  1. Review
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  7. Dual energy X-ray beam ptycho-fluorescence imaging.Journal of synchrotron radiation · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Tiffany W VictorDepartment of Chemistry, Stony Brook University, Stony Brook, NY, 11794, USA.
Lindsey M EasthonDepartment of Chemistry, Boston University, Boston, MA, 02215, USA.
Mingyuan GeNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY, 11973, USA.
Katherine H O'TooleDepartment of Chemistry, Boston University, Boston, MA, 02215, USA.
Randy J SmithNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY, 11973, USA.
Xiaojing HuangNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY, 11973, USA.
Hanfei YanNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY, 11973, USA.
Karen N AllenDepartment of Chemistry, Boston University, Boston, MA, 02215, USA.
Yong S ChuNational Synchrotron Light Source II, Brookhaven National Laboratory, Upton, NY, 11973, USA.
Lisa M MillerDepartment of Chemistry, Stony Brook University, Stony Brook, NY, 11794, USA. lmiller@bnl.gov.
Brookhaven National Laboratory · USBoston University · US

Funding

SBU Chemistry-Biology Interface Training ProgramT32GM092714 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S, TONGE, PETER J · 2010 to 2019
$1.7M
NIGMS NIH HHS T32 GM092714U.S. Department of Energy (DOE) DE-SC0012704
6 · The paper itself

Abstract

X-ray Fluorescence (XRF) microscopy is a growing approach for imaging the trace element concentration, distribution, and speciation in biological cells at the nanoscale. Moreover, three-dimensional nanotomography provides the added advantage of imaging subcellular structure and chemical identity in three dimensions without the need for staining or sectioning of cells. To date, technical challenges in X-ray optics, sample preparation, and detection sensitivity have limited the use of XRF nanotomography in this area. Here, XRF nanotomography was used to image the elemental distribution in individual E. coli bacterial cells using a sub-15 nm beam at the Hard X-ray Nanoprobe beamline (HXN, 3-ID) at NSLS-II. These measurements were simultaneously combined with ptychography to image structural components of the cells. The cells were embedded in small (3-20 µm) sodium chloride crystals, which provided a non-aqueous matrix to retain the three-dimensional structure of the E. coli while collecting data at room temperature. Results showed a generally uniform distribution of calcium in the cells, but an inhomogeneous zinc distribution, most notably with concentrated regions of zinc at the polar ends of the cells. This work demonstrates that simultaneous two-dimensional ptychography and XRF nanotomography can be performed with a sub-15 nm beam size on unfrozen biological cells to co-localize elemental distribution and nanostructure simultaneously.

Indexed as

Escherichia coliTomography, X-Ray

Identifiers

PMID30194316
PMCPMC6128931
OpenAlexW2890658905

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.