Evidence map›Paper›PMID 30194229›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Structural basis for murine norovirus engagement of bile acids and the CD300lf receptor.

Christopher A Nelson, Craig B Wilen, Ya-Nan Dai, Robert C Orchard, Arthur S Kim, Roderick A Stegeman, Leon L Hsieh, Thomas J Smith, Herbert W Virgin, Daved H Fremont

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
9.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 119 citations in OpenAlex.

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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Christopher A NelsonDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Craig B WilenDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Ya-Nan DaiDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Robert C OrchardDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Arthur S KimDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.ORCID 0000-0003-4101-6642
Roderick A StegemanDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Leon L HsiehDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110.
Thomas J SmithDepartment of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, TX 77555.
Herbert W VirginDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110; svirgin@vir.bio fremont@wustl.edu.ORCID 0000-0001-8580-7628
Daved H FremontDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, MO 63110; svirgin@vir.bio fremont@wustl.edu.
Washington University in St. Louis · USThe University of Texas Medical Branch at Galveston · US

Funding

Genetic and Pathway Analysis CoreU19AI109725 · NIAID · WASHINGTON UNIVERSITY · PI ALLEN, PAUL M · 2014 to 2018
$32.7M
SSB PROTEIN/DNA INTERACTIONSR01GM030498 · NIGMS · WASHINGTON UNIVERSITY · PI LOHMAN, TIMOTHY M · 1985 to 2019
$7.4M
Role of CD300 Family in Norovirus Tropism, Persistence, and ImmunityR01AI127552 · NIAID · WASHINGTON UNIVERSITY · PI BALDRIDGE, MEGAN T, FREMONT, DAVED H. · 2017 to 2021
$3.5M
Role of virus-receptor interactions in determining norovirus tropism and pathogenesis in vivoK08AI128043 · NIAID · YALE UNIVERSITY · PI WILEN, CRAIG BRIAN · 2017 to 2021
$940k
Identification and Characterization of Norovirus Cofactors for EntryR00DK116666 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI ORCHARD, ROBERT C. · 2018 to 2020
$747k
NIAID NIH HHS HHSN272201700060CNIAID NIH HHS K08 AI128043NIAID NIH HHS R01 AI127552NIAID NIH HHS U19 AI109725NIDDK NIH HHS R00 DK116666NIGMS NIH HHS R01 GM030498
6 · The paper itself

Abstract

Murine norovirus (MNoV) is closely related to human norovirus (HNoV), an infectious agent responsible for acute gastroenteritis worldwide. Here we report the X-ray crystal structure of the dimeric MNoV VP1 protruding (P) domain in complex with its cellular receptor CD300lf. CD300lf binds the P domain with a 2:2 stoichiometry, engaging a cleft between the AB and DE loops of the P2 subdomain at a site that overlaps the epitopes of neutralizing antibodies. We also identify that bile acids are cofactors enhancing MNoV cell-binding and infectivity. Structures of CD300lf-P domain in complex with glycochenodeoxycholic acid (GCDCA) and lithocholic acid (LCA) reveal two bile acid binding sites at the P domain dimer interface distant from receptor binding sites. The structural determinants for receptor and bile acid binding are supported by numerous biophysical assays utilizing interface residue mutations. We find that the monomeric affinity of CD300lf for the P domain is low and is divalent cation dependent. We have also determined the crystal structure of CD300lf in complex with phosphocholine, revealing that MNoV engages its receptor in a manner mimicking host ligands including similar metal coordination. Docking of the cocomplex structures onto a cryo-EM-derived model of MNoV suggests that each virion can make multiple CD300lf engagements, and thus, infection may be driven by the avidity of cell surface clustered CD300lf. These studies identify multiple potential modulators of norovirus infection that may act to regulate the interaction between the viral capsid P domain and its cognate cellular receptor.

Indexed as

Molecular Docking SimulationAnimalsBile Acids and SaltsCaliciviridae InfectionsCell LineCryoelectron MicroscopyMiceMutationNorovirusProtein DomainsProtein Structure, QuaternaryProtein Structure, SecondaryReceptors, ImmunologicVirionBile Acids and SaltsCLM-1 protein, mouseReceptors, Immunologicbile acidcrystallographynorovirusvirus receptor

Identifiers

PMID30194229
PMCPMC6166816
OpenAlexW2891170808

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.