Evidence map›Paper›PMID 30192788›Full record

ArticlePloS one2018

Next generation sequencing reveals a novel nonsense mutation in MSX1 gene related to oligodontia.

Ondřej Bonczek, Peter Bielik, Přemysl Krejčí, Tomáš Zeman, Lýdie Izakovičová-Hollá, Jana Šoukalová, Jiří Vaněk, Tereza Gerguri, Vladimir J Balcar, Omar Šerý

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Ondřej BonczekLaboratory of Neurobiology and Molecular Psychiatry, Department of Biochemistry, Faculty of Science, Masaryk University, Brno, Czech Republic.
Peter BielikLaboratory of Neurobiology and Molecular Psychiatry, Department of Biochemistry, Faculty of Science, Masaryk University, Brno, Czech Republic.
Přemysl KrejčíInstitute of Dentistry and Oral Sciences, Faculty of Medicine and Dentistry, Palacký University, Olomouc, Czech Republic.
Tomáš ZemanLaboratory of Neurobiology and Molecular Psychiatry, Department of Biochemistry, Faculty of Science, Masaryk University, Brno, Czech Republic.
Lýdie Izakovičová-HolláClinic of Stomatology, Faculty of Medicine, Masaryk University and St. Anne's University Hospital, Brno, Czech Republic.
Jana ŠoukalováClinic of Stomatology, Faculty of Medicine, Masaryk University and St. Anne's University Hospital, Brno, Czech Republic.
Jiří VaněkClinic of Stomatology, Faculty of Medicine, Masaryk University and St. Anne's University Hospital, Brno, Czech Republic.
Tereza GerguriBiomolecular Modelling Laboratory, The Francis Crick Institute, London, United Kingdom.
Vladimir J BalcarLaboratory of Neurobiology and Pathological Physiology, Institute of Animal Physiology and Genetics, The Academy of Sciences of the Czech Republic, Brno, Czech Republic.
Omar ŠerýLaboratory of Neurobiology and Molecular Psychiatry, Department of Biochemistry, Faculty of Science, Masaryk University, Brno, Czech Republic.ORCID 0000-0002-6062-8997
Masaryk University · CZPalacký University Olomouc · CZThe Francis Crick Institute · GBThe University of Sydney · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Tooth agenesis is one of the most common craniofacial disorders in humans. More than 350 genes have been associated with teeth development. In this study, we enrolled 60 child patients (age 13 to 17) with various types of tooth agenesis. Whole gene sequences of PAX9, MSX1, AXIN2, EDA, EDAR and WNT10a genes were sequenced by next generation sequencing on the Illumina MiSeq platform. We found previously undescribed heterozygous nonsense mutation g.8177G>T (c.610G>T) in MSX1 gene in one child. Mutation was verified by Sanger sequencing. Sequencing analysis was performed in other family members of the affected child. All family members carrying g.8177G>T mutation suffered from oligodontia (missing more than 6 teeth excluding third molars). Mutation g.8177G>T leads to a stop codon (p.E204X) and premature termination of Msx1 protein translation. Based on previous in vitro experiments on mutation disrupting function of Msx1 homeodomain, we assume that the heterozygous g.8177G>T nonsense mutation affects the amount and function of Msx1 protein and leads to tooth agenesis.

Indexed as

Codon, NonsenseAdolescentAnodontiaFamilyFemaleHigh-Throughput Nucleotide SequencingHumansModels, MolecularMSX1 Transcription FactorNails, MalformedPedigreeCodon, NonsenseMSX1 protein, humanMSX1 Transcription Factor

Identifiers

PMID30192788
PMCPMC6128526
OpenAlexW2890800666

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.