Evidence map›Paper›PMID 30192762›Full record

ArticlePLoS genetics2018

Hunchback is counter-repressed to regulate even-skipped stripe 2 expression in Drosophila embryos.

Ben J Vincent, Max V Staller, Francheska Lopez-Rivera, Meghan D J Bragdon, Edward C G Pym, Kelly M Biette, Zeba Wunderlich, Timothy T Harden, Javier Estrada, Angela H DePace

Abstract read
In one paragraph

Article in PLoS genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Mechanisms of Interaction between Enhancers and Promoters in ThreeInternational journal of molecular sciences · 2023
    Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. A Mutation in theG3 (Bethesda, Md.) · 2020
    Article
  11. Article
  12. Multimodal transcriptional control of pattern formation in embryonic development.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  13. Review
  14. Article
  15. Causal Gene Regulatory Network Modeling and Genomics: Second-Generation Challenges.Journal of computational biology : a journal of computational molecular cell biology · 2019
    Article
  16. Development (Cambridge, England) · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Ben J VincentDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0003-4598-7016
Max V StallerDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Francheska Lopez-RiveraDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Meghan D J BragdonDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Edward C G PymDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Kelly M BietteDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Zeba WunderlichDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0003-4491-5715
Timothy T HardenDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.ORCID 0000-0001-5322-6271
Javier EstradaDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.
Angela H DePaceDepartment of Systems Biology, Harvard Medical School, Boston, Massachusetts, United States of America.

Funding

Information Integration and Energy Expenditure in Eukaryotic Gene RegulationR01GM122928 · NIGMS · HARVARD MEDICAL SCHOOL · PI DEPACE, ANGELA H, GUNAWARDENA, JEREMY · 2017 to 2024
$3.7M
Diversity in Biomedical Sciences Via Personalized Research and Education Programs for Post-BaccalaureatesR25GM109436 · NIGMS · HARVARD UNIVERSITY · PI D'SOUZA, VICTORIA MANUEL, VELEZ-RUIZ, GISSELLE A · 2016 to 2024
$2.5M
Multi-scale modeling of genetic variation in a developmental networkU01GM103804 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI DEPACE, ANGELA H, MARJORAM, PAUL · 2013 to 2016
$2.0M
Dissecting expression divergence in developmental networks across DrosophilidsR00HD073191 · NICHD · UNIVERSITY OF CALIFORNIA-IRVINE · PI WUNDERLICH, ZEBA B · 2015 to 2017
$745k
Programmable metafluorophores for quantitative multiplex in situ imaging of mRNAR21HD072481 · NICHD · HARVARD MEDICAL SCHOOL · PI YIN, PENG · 2012 to 2013
$452k
Dissecting expression divergence in developmental networks across DrosophilidsK99HD073191 · NICHD · HARVARD MEDICAL SCHOOL · PI WUNDERLICH, ZEBA B · 2012 to 2013
$258k
Kinetic control of transcription in animalsF32GM128310 · NIGMS · HARVARD MEDICAL SCHOOL · PI HARDEN, TIMOTHY · 2018 to 2019
$120k
NICHD NIH HHS K99 HD073191NICHD NIH HHS R00 HD073191NICHD NIH HHS R21 HD072481NIGMS NIH HHS F32 GM128310NIGMS NIH HHS R01 GM122928NIGMS NIH HHS R25 GM109436NIGMS NIH HHS U01 GM103804
6 · The paper itself

Abstract

Hunchback is a bifunctional transcription factor that can activate and repress gene expression in Drosophila development. We investigated the regulatory DNA sequence features that control Hunchback function by perturbing enhancers for one of its target genes, even-skipped (eve). While Hunchback directly represses the eve stripe 3+7 enhancer, we found that in the eve stripe 2+7 enhancer, Hunchback repression is prevented by nearby sequences-this phenomenon is called counter-repression. We also found evidence that Caudal binding sites are responsible for counter-repression, and that this interaction may be a conserved feature of eve stripe 2 enhancers. Our results alter the textbook view of eve stripe 2 regulation wherein Hb is described as a direct activator. Instead, to generate stripe 2, Hunchback repression must be counteracted. We discuss how counter-repression may influence eve stripe 2 regulation and evolution.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsAnimals, Genetically ModifiedBinding SitesDNA-Binding ProteinsDrosophila melanogasterDrosophila ProteinsEmbryo, NonmammalianEnhancer Elements, GeneticFemaleHomeodomain ProteinsMaleTranscription Factorscad protein, DrosophilaDNA-Binding ProteinsDrosophila Proteinseve protein, Drosophilahb protein, DrosophilaHomeodomain ProteinsTranscription Factors

Identifiers

PMID30192762
PMCPMC6145585

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.