Evidence map›Paper›PMID 30191430›Full record

ArticleJournal of industrial microbiology & biotechnology2018

Heterologous production of a new lasso peptide brevunsin in Sphingomonas subterranea.

Shinya Kodani, Hikaru Hemmi, Yuto Miyake, Issara Kaweewan, Hiroyuki Nakagawa

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of industrial microbiology & biotechnology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.4field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 20 citations in OpenAlex.

  1. Lasso Peptides-A New Weapon Against Superbugs.International journal of molecular sciences · 2025
    Review
  2. Review
  3. Article
  4. Unique Physiological and Genetic Features of Ofloxacin-ResistantApplied and environmental microbiology · 2022
    Article
  5. Article
  6. Review
  7. Article
  8. How to harness biosynthetic gene clusters of lasso peptides.Journal of industrial microbiology & biotechnology · 2020
    Review
  9. Lasso Peptides: Heterologous Production and Potential Medical Application.Frontiers in bioengineering and biotechnology · 2020
    Review
  10. Genome mining for lasso peptides: past, present, and future.Journal of industrial microbiology & biotechnology · 2019
    Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Shinya KodaniCollege of Agriculture, Academic Institute, Shizuoka University, 836 Ohya, Suruga-ku, Shizuoka, 422-8529, Japan. kodani.shinya@shizuoka.ac.jp.ORCID http://orcid.org/0000-0002-6792-1184
Hikaru HemmiFood Research Institute, National Agriculture and Food Research Organization (NARO), Ibaraki, 305-8642, Japan.
Yuto MiyakeGraduate School of Integrated Science and Technology, Shizuoka University, Shizuoka, 422-8529, Japan.
Issara KaweewanGraduate School of Science and Technology, Shizuoka University, Shizuoka, 422-8529, Japan.
Hiroyuki NakagawaFood Research Institute, National Agriculture and Food Research Organization (NARO), Ibaraki, 305-8642, Japan.
Shizuoka University · JPFood Research Institute · JPNational Agriculture and Food Research Organization · JP

Funding

Japan Society for the Promotion of Science 16K01913
6 · The paper itself

Abstract

A shuttle vector pHSG396Sp was constructed to perform gene expression using Sphingomonas subterranea as a host. A new lasso peptide biosynthetic gene cluster, derived from Brevundimonas diminuta, was amplified by PCR and integrated to afford a expression vector pHSG396Sp-12697L. The new lasso peptide brevunsin was successfully produced by S. subterranea, harboring the expression vector, with a high production yield (10.2 mg from 1 L culture). The chemical structure of brevunsin was established by NMR and MS/MS experiments. Based on the information obtained from the NOE experiment, the three-dimensional structure of brevunsin was determined, which indicated that brevunsin possessed a typical lasso structure. This expression vector system provides a new heterologous production method for unexplored lasso peptides that are encoded by bacterial genomes.

Indexed as

Genome, BacterialMultigene FamilyAnti-Infective AgentsCaulobacteraceaeCyanogen BromideMagnetic Resonance SpectroscopyPeptide BiosynthesisPeptidesSphingomonasTandem Mass SpectrometryAnti-Infective AgentsCyanogen BromidePeptidesBrevundimonas diminutaHeterologous productionLasso peptideNMRSphingomonas subterranea

Identifiers

PMID30191430
OpenAlexW2889612460

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.