Evidence map›Paper›PMID 30190594›Full record

ArticleScientific reports2018

Viral communities associated with porcine respiratory disease complex in intensive commercial farms in Sichuan province, China.

Sinan Qin, Wenqiang Ruan, Hua Yue, Cheng Tang, Kelei Zhou, Bin Zhang

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  18. Response of lymphocytes from pigs naturally infected with porcine respiratory disease complex at 3 different stages of development.Canadian journal of veterinary research = Revue canadienne de recherche veterinaire · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Sinan QinCollege of Life Science and Technology, Southwest Minzu University, Chengdu, 610041, China.
Wenqiang RuanCollege of Life Science and Technology, Southwest Minzu University, Chengdu, 610041, China.
Hua YueCollege of Life Science and Technology, Southwest Minzu University, Chengdu, 610041, China. yhua900@163.com.
Cheng TangCollege of Life Science and Technology, Southwest Minzu University, Chengdu, 610041, China.
Kelei ZhouCollege of Life Science and Technology, Southwest Minzu University, Chengdu, 610041, China.
Bin ZhangCollege of Life Science and Technology, Southwest Minzu University, Chengdu, 610041, China. binovy@sina.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Porcine respiratory disease complex (PRDC), a common piglet disease, causes substantive economic losses in pig farming. To investigate the viral diversity associated with PRDC, the viral communities in serum and nasal swabs from 26 PRDC-affected piglets were investigated using metagenomics. By deep sequencing and de novo assembly, 17 viruses were identified in two pooled libraries (16 viruses from serum, nine from nasal swabs). Porcine circovirus (PCV)-2, porcine reproductive and respiratory syndrome virus (PRRSV) and pseudorabies virus, all commonly associated with PRDC, were identified in the two pooled samples by metagenomics, but most viruses comprised small linear and circular DNAs (e.g. parvoviruses, bocaviruses and circoviruses). PCR was used to compare the detection rates of each virus in the serum samples from 36 PRDC-affected piglets versus 38 location-matched clinically healthy controls. The average virus category per sample was 6.81 for the PRDC-affected piglets and 4.09 for the controls. Single or co-infections with PCV-2 or PRRSV had very high detection rates in the PRDC-affected piglets. Interestingly, porcine parvovirus (PPV)-2, PPV-3, PPV-6 and torque teno sus virus 1a were significantly associated with PRDC. These results illustrate the complexity of viral communities in the PRDC-affected piglets and highlight the candidate viruses associated with it.

Indexed as

Respiratory Tract DiseasesSwine DiseasesAnimalsChinaCircovirusFarmsHerpesvirus 1, SuidMetagenomicsParvovirus, PorcinePorcine respiratory and reproductive syndrome virusSwine

Identifiers

PMID30190594
PMCPMC6127300

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.