Evidence map›Paper›PMID 30190507›Full record

ArticleScientific reports2018

The involvement of the low-oxygen-activated locus of Burkholderia cenocepacia in adaptation during cystic fibrosis infection.

Louise Cullen, Andrew O'Connor, Sarah McCormack, Rebecca A Owens, Giles S Holt, Cassandra Collins, Máire Callaghan, Sean Doyle, Darren Smith, Kirsten Schaffer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Virulence · 2025
    Article
  3. Review
  4. Article
  5. Identification of Key Factors for Anoxic Survival ofInternational journal of molecular sciences · 2022
    Article
  6. Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Louise CullenCentre of Microbial Host Interactions, Institute of Technology Tallaght, Dublin, 24, Ireland.
Andrew O'ConnorCentre of Microbial Host Interactions, Institute of Technology Tallaght, Dublin, 24, Ireland.
Sarah McCormackSchool of Biomolecular and Biomedical Sciences, University College Dublin, Belfield, Dublin, 4, Ireland.
Rebecca A OwensDepartment of Biology, Maynooth University, Co. Kildare, Ireland.
Giles S HoltFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, England.
Cassandra CollinsCentre of Microbial Host Interactions, Institute of Technology Tallaght, Dublin, 24, Ireland.
Máire CallaghanCentre of Microbial Host Interactions, Institute of Technology Tallaght, Dublin, 24, Ireland.
Sean DoyleDepartment of Biology, Maynooth University, Co. Kildare, Ireland.
Darren SmithFaculty of Health and Life Sciences, Northumbria University, Newcastle upon Tyne, England.ORCID 0000-0003-4925-467X
Kirsten SchafferDepartment of Microbiology, St. Vincent's University Hospital, Elm Park, Dublin, Ireland.
David A FitzpatrickDepartment of Biology, Maynooth University, Co. Kildare, Ireland.
Siobhán McCleanCentre of Microbial Host Interactions, Institute of Technology Tallaght, Dublin, 24, Ireland. siobhan.mcclean@ucd.ie.ORCID 0000-0001-6389-2542
National University of Ireland, Maynooth · IEUniversity College Dublin · IENorthumbria University · GBSt. Vincent's University Hospital · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Chronic infection with opportunistic pathogens including Burkholderia cepacia complex (Bcc) is a hallmark of cystic fibrosis (CF). We investigated the adaptive mechanisms facilitating chronic lung infection in sequential Bcc isolates from two siblings with CF (P1 and P2), one of whom also experienced intermittent blood-stream infections (P2). We previously showed increased lung cell attachment with colonisation time in both P1 and P2. WGS analysis confirmed that the isolates are closely related. Twelve genes showed three or more mutations, suggesting these were genes under selection. Single nucleotide polymorphisms (SNVs) in 45 regulatory genes were also observed. Proteomic analysis showed that the abundance of 149 proteins increased over 61-months in sputum isolates, and both time- and source-related alterations in protein abundance between the second patient's isolates. A consistent time-dependent increase in abundance of 19 proteins encoded by a low-oxygen-activated (lxa) locus was observed in both sets of isolates. Attachment was dramatically reduced in a B. cenocepacia K56-2Δlxa-locus deletion mutant, further indicating that it encodes protein(s) involved in host-cell attachment. Time-related changes in virulence in Galleria mellonella or motility were not observed. We conclude that the lxa-locus, associated with anoxic persistence in vitro, plays a role in host-cell attachment and adaptation to chronic colonization in the hypoxic niche of the CF lung.

Indexed as

Adaptation, PhysiologicalBurkholderia cenocepaciaBurkholderia InfectionsCystic FibrosisGenetic LociPneumonia, BacterialBase SequenceFemaleHumansLungMaleOxygenPolymorphism, Single NucleotideSequence DeletionOxygen

Identifiers

PMID30190507
PMCPMC6127331
OpenAlexW2889315534

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.