Evidence map›Paper›PMID 30189850›Full record

ArticleBMC neuroscience2018

The roles of aromatic residues in the glycine receptor transmembrane domain.

Bijun Tang, Sarah C R Lummis

Open access · goldAbstract read
In one paragraph

Article in BMC neuroscience, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
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  8. Towards the Idea of Molecular Brains.International journal of molecular sciences · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Bijun TangDepartment of Biochemistry, University of Cambridge, Cambridge, UK.
Sarah C R LummisDepartment of Biochemistry, University of Cambridge, Cambridge, UK. sl120@cam.ac.uk.ORCID 0000-0001-9410-9805
University of Cambridge · GB

Funding

Medical Research Council MR/L021676Medical Research Council MR/L021676/1
6 · The paper itself

Abstract

backgroundCys-loop receptors play important roles in fast neuronal signal transmission. Functional receptors are pentamers, with each subunit having an extracellular, transmembrane (TM) and intracellular domain. Each TM domain contains 4 α-helices (M1-M4) joined by loops of varying lengths. Many of the amino acid residues that constitute these α-helices are hydrophobic, and there has been particular interest in aromatic residues, especially those in M4, which have the potential to contribute to the assembly and function of the receptor via a range of interactions with nearby residues.

resultsHere we show that many aromatic residues in the M1, M3 and M4 α-helices of the glycine receptor are involved in the function of the receptor. The residues were explored by creating a range of mutant receptors, characterising them using two electrode voltage clamp in Xenopus oocytes, and interpreting changes in receptor parameters using currently available structural information on the open and closed states of the receptor. For 7 residues function was ablated with an Ala substitution: 3 Tyr residues at the extracellular end of M1, 2 Trp residues located towards the centers of M1 and M3, and a Phe and a Tyr residue in M4. For many of these an alternative aromatic residue restored wild-type-like function indicating the importance of the π ring. EC

conclusionThe data reveal the importance and interactions of aromatic residues in the GlyR M1, M3 and M4 α-helices, many of which are essential for receptor function.

Indexed as

Amino Acid SequenceAnimalsHEK293 CellsHumansHydrophobic and Hydrophilic InteractionsMembrane PotentialsModels, MolecularMutagenesis, Site-DirectedOocytesPatch-Clamp TechniquesProtein DomainsProtein Structure, SecondaryReceptors, GlycineStructure-Activity RelationshipXenopusReceptors, GlycineAromatic amino acidCys-loop receptorElectrophysiologyLigand-gated ion channelMutagenesis

Identifiers

PMID30189850
PMCPMC6127993
OpenAlexW2890788691

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.