Evidence map›Paper›PMID 30187088›Full record

ArticleMicrobial ecology2019

A New Species of the γ-Proteobacterium Francisella, F. adeliensis Sp. Nov., Endocytobiont in an Antarctic Marine Ciliate and Potential Evolutionary Forerunner of Pathogenic Species.

Adriana Vallesi, Andreas Sjödin, Dezemona Petrelli, Pierangelo Luporini, Anna Rita Taddei, Johanna Thelaus, Caroline Öhrman, Elin Nilsson, Graziano Di Giuseppe, Gabriel Gutiérrez and 1 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Microbial ecology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Draft genomes of three cultured members of a psychrophilicMicrobiology resource announcements · 2026
    Article
  3. Review
  4. Symbionts of Ciliates and Ciliates as Symbionts.Indian journal of microbiology · 2024
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Reorganized Genomic Taxonomy ofMicroorganisms · 2021
    Article
  11. Article
  12. Exploring the Diversity Within the GenusFrontiers in microbiology · 2020
    Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 3 countries.

Adriana VallesiSchool of Biosciences and Veterinary Medicine, University of Camerino, 62032, Camerino, MC, Italy. adriana.vallesi@unicam.it.ORCID http://orcid.org/0000-0002-4127-090X
Andreas SjödinDepartment of Chemistry, Computational Life Science Cluster (CLiC), Umeå University, Umeå, Sweden.
Dezemona PetrelliSchool of Biosciences and Veterinary Medicine, University of Camerino, 62032, Camerino, MC, Italy.
Pierangelo LuporiniSchool of Biosciences and Veterinary Medicine, University of Camerino, 62032, Camerino, MC, Italy.
Anna Rita TaddeiCenter of Large Equipment-section of Electron Microscopy, University of Tuscia, Largo dell'Università, snc, Viterbo, Italy.
Johanna ThelausDivision of CBRN Defence and Security, Swedish Defence Research Agency, FOI, Umeå, Sweden.
Caroline ÖhrmanDivision of CBRN Defence and Security, Swedish Defence Research Agency, FOI, Umeå, Sweden.
Elin NilssonDivision of CBRN Defence and Security, Swedish Defence Research Agency, FOI, Umeå, Sweden.
Graziano Di GiuseppeDepartment of Biology, University of Pisa, 56126, Pisa, Italy.
Gabriel GutiérrezDepartamento de Genética, Universidad de Sevilla, Av Reina Mercedes 6, 41012, Seville, Spain.
Eduardo VillaloboDepartamento de Microbiología, Universidad de Sevilla, Av Reina Mercedes 6, 41012, Seville, Spain. evpolo@us.es.
Swedish Defence Research Agency · SEUniversità di Camerino · ITUniversidad de Sevilla · ESUniversità degli Studi della Tuscia · ITUniversity of Pisa · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of the draft genome of an Antarctic marine ciliate, Euplotes petzi, revealed foreign sequences of bacterial origin belonging to the γ-proteobacterium Francisella that includes pathogenic and environmental species. TEM and FISH analyses confirmed the presence of a Francisella endocytobiont in E. petzi. This endocytobiont was isolated and found to be a new species, named F. adeliensis sp. nov.. F. adeliensis grows well at wide ranges of temperature, salinity, and carbon dioxide concentrations implying that it may colonize new organisms living in deeply diversified habitats. The F. adeliensis genome includes the igl and pdp gene sets (pdpC and pdpE excepted) of the Francisella pathogenicity island needed for intracellular growth. Consistently with an F. adeliensis ancient symbiotic lifestyle, it also contains a single insertion-sequence element. Instead, it lacks genes for the biosynthesis of essential amino acids such as cysteine, lysine, methionine, and tyrosine. In a genome-based phylogenetic tree, F. adeliensis forms a new early branching clade, basal to the evolution of pathogenic species. The correlations of this clade with the other clades raise doubts about a genuine free-living nature of the environmental Francisella species isolated from natural and man-made environments, and suggest to look at F. adeliensis as a pioneer in the Francisella colonization of eukaryotic organisms.

Indexed as

Antarctic RegionsDNA Transposable ElementsEuplotesFrancisellaGenome, BacterialPhylogenySeawaterSymbiosisDNA Transposable ElementsEndosymbiosisEnvironmental FrancisellaEuplotesFrancisella phylogenyMicrobial associationsPolar microbiology

Identifiers

PMID30187088
OpenAlexW2891468764

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.