Evidence map›Paper›PMID 30185867›Full record

ArticleScientific reports2018

Hierarchy of human IgG recognition within the Staphylococcus aureus immunome.

Emily E Radke, Stuart M Brown, Adam J Pelzek, Yi Fulmer, David N Hernandez, Victor J Torres, Isaac P Thomsen, William K Chiang, Andy O Miller, Bo Shopsin and 1 more

Abstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Article
  2. Surface display of LukF-PV onFuture microbiology · 2025
    Article
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  4. Surface-Shaving ofMicroorganisms · 2024
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  6. LinkingAntibiotics (Basel, Switzerland) · 2024
    Review
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  9. Article
  10. Article
  11. Observational
  12. Review
  13. Article
  14. Sex-dependent LupusFrontiers in immunology · 2022
    Article
  15. Review
  16. Article
  17. Article
  18. Bacterial toxins in musculoskeletal infections.Journal of orthopaedic research : official publication of the Orthopaedic Research Society · 2021
    Review
  19. Long-Term Sinonasal Carriage ofMicroorganisms · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Emily E RadkeNew York University School of Medicine, Department of Medicine, New York, 10016, USA.ORCID 0000-0001-7517-1005
Stuart M BrownNew York University School of Medicine, Department of Medicine, New York, 10016, USA.ORCID 0000-0002-0906-9907
Adam J PelzekNew York University School of Medicine, Department of Medicine, New York, 10016, USA.
Yi FulmerNew York University School of Medicine, Department of Medicine, New York, 10016, USA.
David N HernandezNew York University School of Medicine, Department of Medicine, New York, 10016, USA.
Victor J TorresNew York University School of Medicine, Department of Microbiology, New York, 10016, USA.ORCID 0000-0002-7126-0489
Isaac P ThomsenVanderbilt University Medical Center, Department of Pediatrics, Division of Infectious Diseases, Nashville, 37232, USA.
William K ChiangNew York University School of Medicine, Department of Medicine, New York, 10016, USA.
Andy O MillerHospital for Special Surgery, New York, 10021, USA.
Bo ShopsinNew York University School of Medicine, Department of Medicine, New York, 10016, USA.
Gregg J SilvermanNew York University School of Medicine, Department of Medicine, New York, 10016, USA. Gregg.Silverman@nyumc.org.

Funding

Identification of B Cell Epitopes Fundamental to Immune Defenses against Staphylococcus Aureus 272201400019C · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SILVERMAN, GREGG · 2014 to 2018
$6.6M
Training Program in Immunology and Inflammation.T32AI100853 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Susan Ruth Schwab · 2012 to 2026
$4.5M
Training in Pharmacological SciencesT32GM066704 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BACH, ERIKA A · 2004 to 2018
$2.6M
Role of precipitous virulence in invasiveness of community-acquired methicillin-rR01AI103268 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI SHOPSIN, BO, TORRES, VICTOR J. · 2013 to 2017
$2.1M
Evaluating the Functional Antibody Response to Pediatric S. aureus InfectionsK23AI113150 · NIAID · VANDERBILT UNIVERSITY MEDICAL CENTER · PI THOMSEN, ISAAC P · 2014 to 2018
$887k
X-RAY CRYSTALLOGRAPHY OF HIV PROTEASEU01AI027220 · NIAID · ABBOTT LABORATORIES · PI FESIK, STEPHEN W · 1988 to 1992
–
NIAID NIH HHS HHSN272201400019CNIAID NIH HHS K23 AI113150NIAID NIH HHS R01 AI103268NIAID NIH HHS T32 AI100853NIGMS NIH HHS T32 GM066704U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) 272201400019C
6 · The paper itself

Abstract

Staphylococcus aureus is an opportunistic pathogen that causes a range of serious infections associated with significant morbidity, by strains increasingly resistant to antibiotics. However, to date all candidate vaccines have failed to induce protective immune responses in humans. We need a more comprehensive understanding of the antigenic targets important in the context of human infection. To investigate infection-associated immune responses, patients were sampled at initial presentation and during convalescence from three types of clinical infection; skin and soft tissue infection (SSTI), prosthetic joint infection (PJI) and pediatric hematogenous osteomyelitis (PHO). Reactivity of serum IgG was tested with an array of recombinant proteins, representing over 2,652 in-vitro-translated open reading frames (ORFs) from a community-acquired methicillin-resistant S. aureus USA300 strain. High-level reactivity was demonstrated for 104 proteins with serum IgG in all patient samples. Overall, high-level IgG-reactivity was most commonly directed against a subset of secreted proteins. Although based on limited surveys, we found subsets of S. aureus proteins with differential reactivity with serum samples from patients with different clinical syndromes. Together, our studies have revealed a hierarchy within the diverse proteins of the S. aureus "immunome", which will help to advance efforts to develop protective immunotherapeutic agents.

Indexed as

AdultAgedAnti-Bacterial AgentsChildFemaleHLA-D AntigensHumansImmunoglobulin GMaleMethicillin-Resistant Staphylococcus aureusMiddle AgedOsteomyelitisProsthesis-Related InfectionsSoft Tissue InfectionsStaphylococcal InfectionsStaphylococcal Skin InfectionsAnti-Bacterial AgentsHLA-D AntigensImmunoglobulin G

Identifiers

PMID30185867
PMCPMC6125462

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.