Evidence map›Paper›PMID 30185819›Full record

ArticleScientific reports2018

The use of random forests modelling to detect yeast-mannan sensitive bacterial changes in the broiler cecum.

A Corrigan, N Russell, M Welge, L Auvil, C Bushell, B A White, R A Murphy

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it, 11 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

A CorriganAlltech Biotechnology, Sarney, Summerhill Road, Dunboyne, County Meath, Ireland. acorrigan@alltech.com.
N RussellUniversity of Illinois at Urbana-Champaign, Urbana, Illinois, USA.ORCID 0000-0002-0905-3614
M WelgeUniversity of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
L AuvilUniversity of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
C BushellUniversity of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
B A WhiteUniversity of Illinois at Urbana-Champaign, Urbana, Illinois, USA.
R A MurphyAlltech Biotechnology, Sarney, Summerhill Road, Dunboyne, County Meath, Ireland.
University of Illinois Urbana-Champaign · USAlltech (Ireland) · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this study, sequencing of the 16S rRNA gene targeting the V4-V6 regions was conducted to assess the cecal microbial alterations in response to dietary supplementation with a yeast derived mannan rich fraction (MRF) in standard commercial broiler production settings across four separate broiler trials. The resulting data was analysed to identify consistent changes in the bacterial community structure of the broiler cecum in response to MRF supplementation. Subsequently, the datasets from each individual trial were pooled and analysed for differences between control and MRF supplemented diets at day 35 posthatch. The results from this analysis showed that Phylum Firmicutes was decreased and Phylum Bacteroidetes was increased across all four trials at day 35 posthatch when compared to the control. An extension of the random forest bioinformatics approach to discover a highly relevant set of microbial operational taxonomic units (OTUs) which are indicative of MRF supplementation in the broiler cecum was then used. This approach has enabled the identification of a novel set of yeast-mannan sensitive bacterial OTUs in the cecal microbiome. This information will be helpful in developing potential future nutritional strategies and will be favourable to the poultry industry.

Indexed as

AnimalsBacteriaBacteroidetesCecumChickensDietary SupplementsDNA, BacterialGastrointestinal MicrobiomeMannansMicrobiotaPhylogenyRNA, Ribosomal, 16SDNA, BacterialMannansRNA, Ribosomal, 16S

Identifiers

PMID30185819
PMCPMC6125325
OpenAlexW2888895748

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.