Evidence map›Paper›PMID 30185805›Full record

ArticleNature communications2018

Stage-specific epigenetic regulation of CD4 expression by coordinated enhancer elements during T cell development.

Priya D Issuree, Kenneth Day, Christy Au, Ramya Raviram, Paul Zappile, Jane A Skok, Hai-Hui Xue, Richard M Myers, Dan R Littman

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
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  3. Review
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  7. Review
  8. A Bcl11bFrontiers in immunology · 2024
    Article
  9. A conserved element in the first intron ofFrontiers in immunology · 2024
    Article
  10. Article
  11. TET proteins regulateFrontiers in immunology · 2024
    Article
  12. Review
  13. Article
  14. TCF-1 Is Required for CD4 T Cell Persistence Functions during AlloImmunity.International journal of molecular sciences · 2023
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 1 country.

Priya D IssureeThe Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY, 10016, USA.
Kenneth DayHudson Alpha Institute for Biotechnology, Huntsville, AL, USA.
Christy AuThe Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY, 10016, USA.
Ramya RaviramDepartment of Pathology, New York University School of Medicine, New York, NY, 10016, USA.
Paul ZappileGenome Technology Center, New York University School of Medicine, New York, NY, 10003, USA.
Jane A SkokDepartment of Pathology, New York University School of Medicine, New York, NY, 10016, USA.
Hai-Hui XueDepartment of Microbiology and Immunology, Carver College of Medicine, University of Iowa, Iowa City, IA, 52242, USA.ORCID http://orcid.org/0000-0002-9163-7669
Richard M MyersHudson Alpha Institute for Biotechnology, Huntsville, AL, USA.
Dan R LittmanThe Kimmel Center for Biology and Medicine of the Skirball Institute, New York University School of Medicine, New York, NY, 10016, USA. dan.littman@med.nyu.edu.
New York University · USHoward Hughes Medical Institute · USHudsonAlpha Institute for Biotechnology · USIntermountain Healthcare · USNew York Genome Center · USUniversity of Iowa · US

Funding

Nuclear organization and its role in gene regulationR35GM122515 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI Jane Amanda Skok · 2017 to 2026
$7.1M
NIGMS NIH HHS R35 GM122515
6 · The paper itself

Abstract

The inheritance of gene expression patterns is dependent on epigenetic regulation, but the establishment and maintenance of epigenetic landscapes during T cell differentiation are incompletely understood. Here we show that two stage-specific Cd4 cis-elements, the previously characterized enhancer E4p and a novel enhancer E4m, coordinately promote Cd4 transcription in mature thymic MHC-II-specific T cells, in part through the canonical Wnt pathway. Specifically, E4p licenses E4m to orchestrate DNA demethylation by TET1 and TET3, which in turn poises the Cd4 locus for transcription in peripheral T cells. Cd4 locus demethylation is important for subsequent Cd4 transcription in activated peripheral T cells wherein these cis-elements become dispensable. By contrast, in developing thymocytes the loss of TET1/3 does not affect Cd4 transcription, highlighting an uncoupled event between transcription and epigenetic modifications. Together our findings reveal an important function for thymic cis-elements in governing gene expression in the periphery via a heritable epigenetic mechanism.

Indexed as

AnimalsCD4 AntigensCD4-Positive T-LymphocytesCell DifferentiationChimeraDioxygenasesDNA-Binding ProteinsDNA DemethylationDNA MethylationEnhancer Elements, GeneticEpigenesis, GeneticFemaleGene Expression RegulationGene Knockout TechniquesMiceMice, Inbred C57BLCD4 AntigensDioxygenasesDNA-Binding ProteinsProto-Oncogene ProteinsTET1 protein, mouseTet3 protein, mouse

Identifiers

PMID30185805
PMCPMC6125341
OpenAlexW2889064177

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.