Evidence map›Paper›PMID 30185791›Full record

ArticleNature communications2018

Combining discovery and targeted proteomics reveals a prognostic signature in oral cancer.

Carolina Moretto Carnielli, Carolina Carneiro Soares Macedo, Tatiane De Rossi, Daniela Campos Granato, César Rivera, Romênia Ramos Domingues, Bianca Alves Pauletti, Sami Yokoo, Henry Heberle, Ariane Fidelis Busso-Lopes and 23 more

Abstract readValidation Study
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 2 syntheses or guidelines pooled it.

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  12. [Combination of proteome and transcriptome analysis to predict survival and immunotherapy response in patients with head and neck squamous cell carcinoma].Lin chuang er bi yan hou tou jing wai ke za zhi = Journal of clinical otorhinolaryngology head and neck surgery · 2025
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  14. HAS1Journal of experimental & clinical cancer research : CR · 2025
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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

33 authors.

Carolina Moretto Carnielli *Laboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.ORCID http://orcid.org/0000-0001-8336-7390
Carolina Carneiro Soares Macedo *Laboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Tatiane De RossiLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Daniela Campos GranatoLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
César RiveraLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.ORCID http://orcid.org/0000-0002-5491-4233
Romênia Ramos DominguesLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Bianca Alves PaulettiLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Sami YokooLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Henry HeberleInstituto de Ciências Matemáticas e de Computação, Universidade de São Paulo (USP), São Carlos, 13560-970, SP, Brazil.ORCID http://orcid.org/0000-0003-1964-268X
Ariane Fidelis Busso-LopesLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Nilva Karla CervigneDepartamento de Diagnóstico Oral, Faculdade de Odontologia de Piracicaba Universidade Estadual de Campinas (UNICAMP), Piracicaba, 13414-903, SP, Brazil.
Iris Sawazaki-CaloneCentro de Ciências Biológicas e da Saúde, Faculdade de Odontologia, Universidade Estadual do Oeste do Paraná, Cascavel, 85819- 110, PR, Brazil.
Gabriela Vaz MeirellesLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil.
Fábio Albuquerque MarchiCentro Internacional de Pesquisa-CIPE - A.C.Camargo Cancer Center and Instituto Nacional de Ciência e Tecnologia em Oncogenômica (INCiTO), São Paulo, 01508-010, SP, Brazil.
Guilherme Pimentel TellesInstituto de Computação, Universidade Estadual de Campinas (UNICAMP), Campinas, 13083-852, SP, Brazil.
Rosane MinghimInstituto de Ciências Matemáticas e de Computação, Universidade de São Paulo (USP), São Carlos, 13560-970, SP, Brazil.
Ana Carolina Prado RibeiroServiço de Odontologia Oncológica, Instituto do Câncer do Estado de São Paulo, ICESP-FMUSP, São Paulo, 01246-000, SP, Brazil.
Thaís Bianca BrandãoServiço de Odontologia Oncológica, Instituto do Câncer do Estado de São Paulo, ICESP-FMUSP, São Paulo, 01246-000, SP, Brazil.
Gilberto de CastroServiço de Oncologia Clínica, Instituto do Câncer do Estado de São Paulo, Octavio Frias de Oliveira, ICESP, São Paulo, 01246000, Brazil.
Wilfredo Alejandro González-ArriagadaFacultad de Odontología, Universidad de Valparaíso, Valparaíso, 2340-000, Chile.
Alexandre GomesWaters Corporation, Campinas, 13070-091, SP, Brazil.
Fabio PenteadoWaters Corporation, Campinas, 13070-091, SP, Brazil.
Alan Roger Santos-SilvaDepartamento de Diagnóstico Oral, Faculdade de Odontologia de Piracicaba Universidade Estadual de Campinas (UNICAMP), Piracicaba, 13414-903, SP, Brazil.
Márcio Ajudarte LopesDepartamento de Diagnóstico Oral, Faculdade de Odontologia de Piracicaba Universidade Estadual de Campinas (UNICAMP), Piracicaba, 13414-903, SP, Brazil.
Priscila Campioni RodriguesCancer and Translational Medicine Research Unit, University of Oulu, Oulu, FI-90014, Finland.
Elias SundquistCancer and Translational Medicine Research Unit, University of Oulu, Oulu, FI-90014, Finland.
Tuula SaloCancer and Translational Medicine Research Unit, University of Oulu, Oulu, FI-90014, Finland.
Sabrina Daniela da SilvaDepartment of Otolaryngology-Head and Neck Surgery, Jewish General Hospital, McGill University, Montréal, H4A 3J1, Canada.
Moulay A Alaoui-JamaliLady Davis Institute for Medical Research and Segal Cancer Center, SMBD Jewish General Hospital, Departments of Medicine and Oncology, Faculty of Medicine, McGill University, Montreal, H3T 1E2, Canada.
Edgard GranerDepartamento de Diagnóstico Oral, Faculdade de Odontologia de Piracicaba Universidade Estadual de Campinas (UNICAMP), Piracicaba, 13414-903, SP, Brazil.
Jay W FoxDepartment of Microbiology, Immunology and Cancer Biology, University of Virginia, Charlottesville, 22903, VA, USA.
Ricardo Della ColettaDepartamento de Diagnóstico Oral, Faculdade de Odontologia de Piracicaba Universidade Estadual de Campinas (UNICAMP), Piracicaba, 13414-903, SP, Brazil.
Adriana Franco Paes LemeLaboratório de Espectrometria de Massas, Laboratório Nacional de Biociências (LNBio), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Campinas, 13083-970, SP, Brazil. adriana.paesleme@lnbio.cnpem.br.ORCID http://orcid.org/0000-0001-7959-147X

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Different regions of oral squamous cell carcinoma (OSCC) have particular histopathological and molecular characteristics limiting the standard tumor-node-metastasis prognosis classification. Therefore, defining biological signatures that allow assessing the prognostic outcomes for OSCC patients would be of great clinical significance. Using histopathology-guided discovery proteomics, we analyze neoplastic islands and stroma from the invasive tumor front (ITF) and inner tumor to identify differentially expressed proteins. Potential signature proteins are prioritized and further investigated by immunohistochemistry (IHC) and targeted proteomics. IHC indicates low expression of cystatin-B in neoplastic islands from the ITF as an independent marker for local recurrence. Targeted proteomics analysis of the prioritized proteins in saliva, combined with machine-learning methods, highlights a peptide-based signature as the most powerful predictor to distinguish patients with and without lymph node metastasis. In summary, we identify a robust signature, which may enhance prognostic decisions in OSCC and better guide treatment to reduce tumor recurrence or lymph node metastasis.

Indexed as

Biomarkers, TumorCarcinoma, Squamous CellClinical Decision-MakingFemaleFollow-Up StudiesHumansImmunohistochemistryLymphatic MetastasisMachine LearningMaleMiddle AgedMouth NeoplasmsNeoplasm Recurrence, LocalPeptidesPredictive Value of TestsPrognosisBiomarkers, TumorPeptides

Identifiers

PMID30185791
PMCPMC6125363

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.