Evidence map›Paper›PMID 30185787›Full record

ArticleNature communications2018

Runx-dependent and silencer-independent repression of a maturation enhancer in the Cd4 gene.

Satoshi Kojo, Nighat Yasmin, Sawako Muroi, Mari Tenno, Ichiro Taniuchi

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Transcriptional network dynamics in early T cell development.The Journal of experimental medicine · 2024
    Review
  5. Review
  6. A Bcl11bFrontiers in immunology · 2024
    Article
  7. A conserved element in the first intron ofFrontiers in immunology · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Bcl11b/Ctip2 in Skin, Tooth, and Craniofacial System.Frontiers in cell and developmental biology · 2020
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Satoshi KojoLaboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.ORCID http://orcid.org/0000-0002-9263-8831
Nighat YasminLaboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.
Sawako MuroiLaboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.
Mari TennoLaboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan.
Ichiro TaniuchiLaboratory for Transcriptional Regulation, RIKEN Center for Integrative Medical Sciences (IMS), 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, 230-0045, Japan. ichiro.taniuchi@riken.jp.
RIKEN Center for Integrative Medical Sciences · JPKing Edward Medical University · PK

Funding

Japan Society for the Promotion of Science (JSPS) 14F04214Japan Society for the Promotion of Science (JSPS) JP19390118
6 · The paper itself

Abstract

An intronic silencer, S4, in the Cd4 gene has been shown to be responsible for the helper-lineage-specific expression of CD4; S4 requires Runx complex binding to exert its silencer function against the enhancer-mediated Cd4 activation by modulating the epigenetic state of the Cd4 gene. Here we identify a late-acting maturation enhancer. Bcl11b plays essential roles for activation of both the early-acting proximal enhancer and maturation enhancer of Cd4. Notably, Runx complexes suppress these enhancers by distinct mechanisms. Whereas repression of the proximal enhancer depends on the S4 silencer, the maturation enhancer is repressed by Runx in the absence of S4. Moreover, ThPOK, known to antagonize S4-mediated Cd4 repression, assists Runx complexes to restrain maturation enhancer activation. Distinct modes of S4 silencer action upon distinct enhancers thus unravel a pathway that restricts CD4 expression to helper-lineage cells by silencer-independent and Runx-dependent repression of maturation enhancer activity in cytotoxic-lineage cells.

Indexed as

AnimalsCD4 AntigensCells, CulturedChimeraCore Binding Factor Alpha 2 SubunitCore Binding Factor Alpha 3 SubunitEnhancer Elements, GeneticGene Expression RegulationIntronsMiceMice, TransgenicRepressor ProteinsSilencer Elements, TranscriptionalT-Lymphocytes, CytotoxicT-Lymphocytes, Helper-InducerTranscription FactorsBcl11b protein, mouseCD4 AntigensCore Binding Factor Alpha 2 SubunitCore Binding Factor Alpha 3 SubunitRepressor ProteinsRunx1 protein, mouseRunx3 protein, mouseTranscription FactorsTumor Suppressor ProteinsZbtb7b protein, mouse

Identifiers

PMID30185787
PMCPMC6125603
OpenAlexW2888828946

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.