Evidence map›Paper›PMID 30185622›Full record

ArticleThe Journal of biological chemistry2018

Molecular interactions connecting the function of the serine-arginine-rich protein SRSF1 to protein phosphatase 1.

Brandon E Aubol, Pedro Serrano, Laurent Fattet, Kurt Wüthrich, Joseph A Adams

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  5. SRSF1 interactome determined by proximity labeling reveals direct interaction with spliceosomal RNA helicase DDX23.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  12. CLK1 reorganizes the splicing factor U1-70K for early spliceosomal protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Brandon E AubolFrom the Department of Pharmacology, University of California San Diego, La Jolla, California 92093-0636 and.
Pedro Serranothe Department of Integrative Structural and Computational Biology and.
Laurent FattetFrom the Department of Pharmacology, University of California San Diego, La Jolla, California 92093-0636 and.ORCID 0000-0001-5152-4937
Kurt Wüthrichthe Department of Integrative Structural and Computational Biology and.
Joseph A AdamsFrom the Department of Pharmacology, University of California San Diego, La Jolla, California 92093-0636 and j2adams@ucsd.edu.
University of California San Diego · USScripps Research Institute · US

Funding

Role of protein phosphorylation in RNA splicingR01GM067969 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, JOSEPH · 2004 to 2024
$6.4M
Clk Kinases and Splicing RegulationR01GM098528 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI ADAMS, JOSEPH · 2012 to 2019
$2.5M
NIGMS NIH HHS R01 GM067969NIGMS NIH HHS R01 GM098528
6 · The paper itself

Abstract

Splicing generates many mRNA strands from a single precursor mRNA, expanding the proteome and enhancing intracellular diversity. Both initial assembly and activation of the spliceosome require an essential family of splicing factors called serine-arginine (SR) proteins. Protein phosphatase 1 (PP1) regulates the SR proteins by controlling phosphorylation of a C-terminal arginine-serine-rich (RS) domain. These modifications are vital for the subcellular localization and mRNA splicing function of the SR protein. Although PP1 has been shown to dephosphorylate the prototype SR protein splicing factor 1 (SRSF1), the molecular nature of this interaction is not understood. Here, using NMR spectroscopy, we identified two electrostatic residues in helix α2 and a hydrophobic residue in helix α1 in the RNA recognition motif 1 (RRM1) of SRSF1 that constitute a binding surface for PP1. Substitution of these residues dissociated SRSF1 from PP1 and enhanced phosphatase activity, reducing phosphorylation in the RS domain. These effects lead to shifts in alternative splicing patterns that parallel increases in SRSF1 diffusion from speckles to the nucleoplasm brought on by regiospecific decreases in RS domain phosphorylation. Overall, these findings establish a molecular and biological connection between PP1-targeted amino acids in an RRM with the phosphorylation state and mRNA-processing function of an SR protein.

Indexed as

Alternative SplicingAmino Acid SequenceArginineCrystallography, X-RayHumansPhosphorylationProtein BindingProtein ConformationProtein Processing, Post-TranslationalReceptors, Neuropeptide YRibonucleoside Diphosphate ReductaseSequence HomologySerineSerine-Arginine Splicing FactorsSpliceosomesTumor Suppressor ProteinsArginineneuropeptide Y4 receptorReceptors, Neuropeptide YRibonucleoside Diphosphate ReductaseRRM1 protein, humanSerineSerine-Arginine Splicing FactorsSRSF1 protein, humanTumor Suppressor Proteinsenzyme kineticsenzyme mutationphosphatasephosphorylationprotein kinase

Identifiers

PMID30185622
PMCPMC6204901
OpenAlexW2891476940

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.