Evidence map›Paper›PMID 30185561›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2018

Insights into autophagosome biogenesis from structural and biochemical analyses of the ATG2A-WIPI4 complex.

Saikat Chowdhury, Chinatsu Otomo, Alexander Leitner, Kazuto Ohashi, Ruedi Aebersold, Gabriel C Lander, Takanori Otomo

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 128 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
128citing papers in PubMed, 1 pooled it
17.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

128 citing papers in PubMed, 1 synthesis or guideline pooled it, 215 citations in OpenAlex.

  1. Stay in touch with the endoplasmic reticulum.Science China. Life sciences · 2024
    Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Regulation and roles of mammalian mitophagy.Nature reviews. Molecular cell biology · 2026
    Review
  7. Functional Homology of WIPI4 and Atg18 EnablesInternational journal of molecular sciences · 2026
    Article
  8. Article
  9. The Human Autophagy Core Complexes.Annual review of biochemistry · 2026
    Review
  10. Article
  11. Article
  12. The molecular mechanism of lipid uptake by membrane-anchored bridge-like lipid transfer proteins.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  13. Review
  14. ATG2 is a triglyceride transfer protein.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Progress on multifunctional transmembrane protein ATG9A.Cell communication and signaling : CCS · 2025
    Review
  20. Article

68 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Saikat ChowdhuryDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.ORCID 0000-0001-8043-5028
Chinatsu OtomoDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.
Alexander LeitnerDepartment of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, 8093 Zurich, Switzerland.ORCID 0000-0003-4126-0725
Kazuto OhashiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037.
Ruedi AebersoldDepartment of Biology, Institute of Molecular Systems Biology, Eidgenössische Technische Hochschule Zürich, 8093 Zurich, Switzerland.ORCID 0000-0002-9576-3267
Gabriel C LanderDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037; glander@scripps.edu totomo@scripps.edu.
Takanori OtomoDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA 92037; glander@scripps.edu totomo@scripps.edu.ORCID 0000-0003-3589-238X
Scripps Research Institute · USETH Zurich · CHUniversity of Zurich · CH

Funding

Structural Studies of the Autophagic Ubiquitin-Like ProteinsR01GM092740 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI OTOMO, TAKANORI · 2011 to 2023
$5.9M
Molecular basis of axonal transport described by high-resolution 3D imagingDP2EB020402 · NIBIB · SCRIPPS RESEARCH INSTITUTE, THE · PI LANDER, GABRIEL C · 2014 to 2014
$2.8M
NIBIB NIH HHS DP2 EB020402NIGMS NIH HHS R01 GM092740
6 · The paper itself

Abstract

Autophagy is an enigmatic cellular process in which double-membrane compartments, called "autophagosomes, form de novo adjacent to the endoplasmic reticulum (ER) and package cytoplasmic contents for delivery to lysosomes. Expansion of the precursor membrane phagophore requires autophagy-related 2 (ATG2), which localizes to the PI3P-enriched ER-phagophore junction. We combined single-particle electron microscopy, chemical cross-linking coupled with mass spectrometry, and biochemical analyses to characterize human ATG2A in complex with the PI3P effector WIPI4. ATG2A is a rod-shaped protein that can bridge neighboring vesicles through interactions at each of its tips. WIPI4 binds to one of the tips, enabling the ATG2A-WIPI4 complex to tether a PI3P-containing vesicle to another PI3P-free vesicle. These data suggest that the ATG2A-WIPI4 complex mediates ER-phagophore association and/or tethers vesicles to the ER-phagophore junction, establishing the required organization for phagophore expansion via the transfer of lipid membranes from the ER and/or the vesicles to the phagophore.

Indexed as

AutophagyAmino Acid SequenceAutophagosomesAutophagy-Related ProteinsEndoplasmic ReticulumHumansMembrane ProteinsMultiprotein ComplexesPhosphatidylinositol PhosphatesProtein ConformationSequence HomologyAutophagy-Related ProteinsMembrane ProteinsMultiprotein Complexesphosphatidylinositol 3-phosphatePhosphatidylinositol PhosphatesWIPI1 protein, humanATG2autophagychemical cross-linking coupled with mass spectrometrymembrane tetheringsingle-particle analysis

Identifiers

PMID30185561
PMCPMC6196511
OpenAlexW2890848016

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.