Evidence map›Paper›PMID 30183703›Full record

ArticlePloS one2018

Transcriptome analysis of Polianthes tuberosa during floral scent formation.

Ronghui Fan, Yiquan Chen, Xiuxian Ye, Jianshe Wu, Bing Lin, Huaiqin Zhong

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.6field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Frontiers in microbiology · 2024
    Article
  6. Transcriptome Analyses Reveal the Aroma Terpeniods Biosynthesis Pathways ofInternational journal of molecular sciences · 2023
    Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. The role of volatiles in plant communication.The Plant journal : for cell and molecular biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Ronghui FanInstitute of Crop Sciences, Fujian Academy of Agricultural Science, Fuzhou, Fujian, China.ORCID 0000-0001-9083-1980
Yiquan ChenInstitute of Agricultural Engineering Technology, Fujian Academy of Agricultural Science, Fuzhou, Fujian, China.
Xiuxian YeInstitute of Crop Sciences, Fujian Academy of Agricultural Science, Fuzhou, Fujian, China.
Jianshe WuInstitute of Crop Sciences, Fujian Academy of Agricultural Science, Fuzhou, Fujian, China.
Bing LinInstitute of Crop Sciences, Fujian Academy of Agricultural Science, Fuzhou, Fujian, China.
Huaiqin ZhongInstitute of Crop Sciences, Fujian Academy of Agricultural Science, Fuzhou, Fujian, China.
Fujian Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Polianthes tuberosa is a popular ornamental plant. Its floral scent volatiles mainly consist of terpenes and benzenoids that emit a charming fragrance. However, our understanding of the molecular mechanism responsible for the floral scent of P. tuberosa is limited. Using transcriptome sequencing and de novo assembly, a total of 228,706,703 high-quality reads were obtained, which resulted in the identification of 96,906 unigenes (SRA Accession Number SRP126470, TSA Acc. No. GGEA00000000). Approximately 41.85% of the unigenes were functionally annotated using public databases. A total of 4,694 differentially expressed genes (DEGs)were discovered during flowering. Gas chromatography-mass spectrometry analysis revealed that the majority of the volatiles comprised benzenoids and small amounts of terpenes. Homology analysis identified 13 and 17 candidate genes associated with terpene and benzenoid biosynthesis, respectively. Among these, PtTPS1, PtDAHPSs, PtPAL1, and PtBCMT2 might play important roles in regulating the formation of floral volatiles. The data generated by transcriptome sequencing provide a critical resource for exploring concrete characteristics as well as for supporting functional genomics studies. The results of the present study also lay the foundation for the elucidation of the molecular mechanism underlying the regulation of floral scents in monocots.

Indexed as

Gene Expression ProfilingOdorantsAsparagaceaeFlowersGene Expression Regulation, PlantPlant ProteinsPlant Proteins

Identifiers

PMID30183703
PMCPMC6124719
OpenAlexW2891564043

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.