Evidence map›Paper›PMID 30181649›Full record

ArticleJournal of human genetics2018

Identification of novel pathogenic variants and novel gene-phenotype correlations in Mexican subjects with microphthalmia and/or anophthalmia by next-generation sequencing.

Diana Matías-Pérez, Leopoldo A García-Montaño, Marisa Cruz-Aguilar, Iván A García-Montalvo, Jessica Nava-Valdéz, Tania Barragán-Arevalo, Cristina Villanueva-Mendoza, Camilo E Villarroel, Clavel Guadarrama-Vallejo, Rocío Villafuerte-de la Cruz and 2 more

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In one paragraph

Article in Journal of human genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  9. Mutation ofeLife · 2023
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  14. Elevated TGFβ signaling contributes to ocular anterior segment dysgenesis in Col4a1 mutant mice.Matrix biology : journal of the International Society for Matrix Biology · 2022
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  16. Observational
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Diana Matías-PérezInstituto Tecnológico de Oaxaca, Oaxaca, Mexico.ORCID http://orcid.org/0000-0002-6592-9342
Leopoldo A García-MontañoDepartment of Genetics-Research Unit, Institute of Ophthalmology "Conde de Valenciana", Mexico City, Mexico.
Marisa Cruz-AguilarDepartment of Genetics-Research Unit, Institute of Ophthalmology "Conde de Valenciana", Mexico City, Mexico.
Iván A García-MontalvoUnidad de Bioquímica e Inmunología, Instituto Tecnológico de Oaxaca, Oaxaca, Mexico.ORCID http://orcid.org/0000-0003-4993-9249
Jessica Nava-ValdézDepartment of Genetics-Research Unit, Institute of Ophthalmology "Conde de Valenciana", Mexico City, Mexico.
Tania Barragán-ArevaloDepartment of Human Genetics, National Institute of Pediatrics of Mexico, Mexico City, Mexico.
Cristina Villanueva-MendozaDepartment of Genetics, Hospital "Dr. Luis Sanchez Bulnes", Asociación Para Evitar la Ceguera en México, Mexico City, Mexico.
Camilo E VillarroelDepartment of Human Genetics, National Institute of Pediatrics of Mexico, Mexico City, Mexico.
Clavel Guadarrama-VallejoDepartment of Genetics-Research Unit, Institute of Ophthalmology "Conde de Valenciana", Mexico City, Mexico.
Rocío Villafuerte-de la CruzCiencias Basicas, Escuela de Medicina, Instituto Tecnológico y de Estudios Superiores de Monterrey, Monterrey, NL, Mexico.
Oscar Chacón-CamachoDepartment of Genetics-Research Unit, Institute of Ophthalmology "Conde de Valenciana", Mexico City, Mexico.
Juan C ZentenoDepartment of Genetics-Research Unit, Institute of Ophthalmology "Conde de Valenciana", Mexico City, Mexico. jczenteno@institutodeoftalmologia.org.
Institute of Ophthalmology · MXInstituto Tecnológico de Oaxaca · MXAsociacion Para Evitar la Ceguera en México Hospital Dr. Luis Sánchez Bulnes · MXTecnológico de Monterrey · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Severe congenital eye malformations, particularly microphthalmia and anophthalmia, are one of the main causes of visual handicap worldwide. They can arise from multifactorial, chromosomal, or monogenic factors and can be associated with extensive clinical variability. Genetic analysis of individuals with these defects has allowed the recognition of dozens of genes whose mutations lead to disruption of normal ocular embryonic development. Recent application of next generation sequencing (NGS) techniques for genetic screening of patients with congenital eye defects has greatly improved the recognition of monogenic cases. In this study, we applied clinical exome NGS to a group of 14 Mexican patients (including 7 familial and 7 sporadic cases) with microphthalmia and/or anophthalmia. Causal or likely causal pathogenic variants were demonstrated in ~60% (8 out of 14 patients) individuals. Seven out of 8 different identified mutations occurred in well-known microphthalmia/anophthalmia genes (OTX2, VSX2, MFRP, VSX1) or in genes associated with syndromes that include ocular defects (CHD7, COL4A1) (including two instances of CHD7 pathogenic variants). A single pathogenic variant was identified in PIEZO2, a gene that was not previously associated with isolated ocular defects. NGS efficiently identified the genetic etiology of microphthalmia/anophthalmia in ~60% of cases included in this cohort, the first from Mexican origin analyzed to date. The molecular defects identified through clinical exome sequencing in this study expands the phenotypic spectra of CHD7-associated disorders and implicate PIEZO2 as a candidate gene for major eye developmental defects.

Indexed as

AnophthalmosGenetic VariationHigh-Throughput Nucleotide SequencingMicrophthalmosPhenotypeAdolescentAdultChildFemaleHumansInfantIon ChannelsMaleMexicoIon ChannelsPIEZO2 protein, human

Identifiers

PMID30181649
OpenAlexW2890193973

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.