Evidence map›Paper›PMID 30181556›Full record

ArticleNature communications2018

The prognostic effects of somatic mutations in ER-positive breast cancer.

Obi L Griffith, Nicholas C Spies, Meenakshi Anurag, Malachi Griffith, Jingqin Luo, Dongsheng Tu, Belinda Yeo, Jason Kunisaki, Christopher A Miller, Kilannin Krysiak and 23 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 99 papers.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed
4.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 138 citations in OpenAlex.

  1. Trial
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  12. CDK4/6 Inhibitors in Breast Cancer-Who Should Receive Them?International journal of molecular sciences · 2025
    Review
  13. Rat somatic genome editing enables ER+ breast cancer modeling.bioRxiv : the preprint server for biology · 2025
    Article
  14. Article
  15. NF1-depleted ERScience translational medicine · 2025
    Article
  16. Article
  17. Review
  18. Review
  19. Characterization of Exhausted T Cell Signatures in Pan-Cancer Settings.International journal of molecular sciences · 2025
    Article
  20. Article

39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 5 institutions in 3 countries.

Obi L GriffithMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.ORCID http://orcid.org/0000-0002-0843-4271
Nicholas C SpiesMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Meenakshi AnuragLester and Sue Smith Breast Center and Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, 77030, TX, USA.
Malachi GriffithMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Jingqin LuoSiteman Cancer Center, Washington University School of Medicine, St. Louis, 63110, MO, USA.
Dongsheng TuGenetic Pathology Evaluation Centre, University of British Columbia, Vancouver, V6H 3Z6, Canada.
Belinda YeoInstitute of Cancer Research, London, SM2 5NG, UK.
Jason KunisakiMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Christopher A MillerMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Kilannin KrysiakMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.ORCID http://orcid.org/0000-0002-6299-9230
Jasreet HundalMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Benjamin J AinscoughMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.ORCID http://orcid.org/0000-0001-8340-514X
Zachary L SkidmoreMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Katie CampbellMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Runjun KumarDepartment of Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, 63110, MO, USA.
Catrina FronickMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Lisa CookMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Jacqueline E SniderDepartment of Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, 63110, MO, USA.
Sherri DaviesDepartment of Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, 63110, MO, USA.ORCID http://orcid.org/0000-0002-7141-8354
Shyam M KavuriLester and Sue Smith Breast Center and Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, 77030, TX, USA.
Eric C ChangLester and Sue Smith Breast Center and Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, 77030, TX, USA.
Vincent MagriniMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
David E LarsonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.ORCID http://orcid.org/0000-0001-7934-5906
Robert S FultonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Shuzhen LiuGenetic Pathology Evaluation Centre, University of British Columbia, Vancouver, V6H 3Z6, Canada.
Samuel LeungGenetic Pathology Evaluation Centre, University of British Columbia, Vancouver, V6H 3Z6, Canada.
David VoducGenetic Pathology Evaluation Centre, University of British Columbia, Vancouver, V6H 3Z6, Canada.
Ron BoseDepartment of Medicine, Division of Oncology, Washington University School of Medicine, St. Louis, 63110, MO, USA.
Mitch DowsettInstitute of Cancer Research, London, SM2 5NG, UK.
Richard K WilsonMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA.
Torsten O NielsenGenetic Pathology Evaluation Centre, University of British Columbia, Vancouver, V6H 3Z6, Canada.
Elaine R MardisMcDonnell Genome Institute, Washington University School of Medicine, St. Louis, 63108, MO, USA. elaine.mardis@nationwidechildrens.org.
Matthew J EllisLester and Sue Smith Breast Center and Dan L. Duncan Cancer Center, Baylor College of Medicine, Houston, 77030, TX, USA. mjellis@bcm.edu.
James S. McDonnell Foundation · USUniversity of British Columbia · CAWashington University in St. Louis · USBaylor College of Medicine · USInstitute of Cancer Research · GB

Funding

Translational Therapeutics Research Program (TT)P30CA016058 · NCI · OHIO STATE UNIVERSITY · PI Daniel G. Stover · 1985 to 2026
$132.3M
DEVELOPMENT OF INFORMATICS RESOURCES FOR INTERPRETATION OF CLINICALLY ACTIONABLE VARIANTS IN CANCERU01CA209936 · NCI · WASHINGTON UNIVERSITY · PI GRIFFITH, OBI L. · 2016 to 2018
$1.0M
Integrated Analysis & Interpretation of Whole Genome Exome & Transcriptome SequenR00HG007940 · NHGRI · WASHINGTON UNIVERSITY · PI GRIFFITH, MALACHI · 2017 to 2019
$724k
DEFINING THE REGULATORY, NON-CODING, MUTATIONAL LANDSCAPE OF BREAST CANCERK22CA188163 · NCI · WASHINGTON UNIVERSITY · PI GRIFFITH, OBI L. · 2014 to 2016
$515k
Cancer Prevention and Research Institute of Texas (Cancer Prevention Research Institute of Texas) RR140033NCI NIH HHS K22 CA188163NCI NIH HHS P30 CA016058NCI NIH HHS U01 CA209936NHGRI NIH HHS R00 HG007940Susan G. Komen CCR16380599Susan G. Komen PG12220321U.S. Department of Defense (DOD) W81XWH-16-0538
6 · The paper itself

Abstract

Here we report targeted sequencing of 83 genes using DNA from primary breast cancer samples from 625 postmenopausal (UBC-TAM series) and 328 premenopausal (MA12 trial) hormone receptor-positive (HR+) patients to determine interactions between somatic mutation and prognosis. Independent validation of prognostic interactions was achieved using data from the METABRIC study. Previously established associations between MAP3K1 and PIK3CA mutations with luminal A status/favorable prognosis and TP53 mutations with Luminal B/non-luminal tumors/poor prognosis were observed, validating the methodological approach. In UBC-TAM, NF1 frame-shift nonsense (FS/NS) mutations were also a poor outcome driver that was validated in METABRIC. For MA12, poor outcome associated with PIK3R1 mutation was also reproducible. DDR1 mutations were strongly associated with poor prognosis in UBC-TAM despite stringent false discovery correction (q = 0.0003). In conclusion, uncommon recurrent somatic mutations should be further explored to create a more complete explanation of the highly variable outcomes that typifies ER+ breast cancer.

Indexed as

MutationAdultBreast NeoplasmsCase-Control StudiesClass Ia Phosphatidylinositol 3-KinaseClass I Phosphatidylinositol 3-KinasesCohort StudiesDiscoidin Domain Receptor 1FemaleHumansMAP Kinase Kinase Kinase 1Middle AgedNeurofibromin 1Phosphatidylinositol 3-KinasesPostmenopausePrognosisClass Ia Phosphatidylinositol 3-KinaseClass I Phosphatidylinositol 3-KinasesDDR1 protein, humanDiscoidin Domain Receptor 1MAP3K1 protein, humanMAP Kinase Kinase Kinase 1Neurofibromin 1Phosphatidylinositol 3-KinasesPIK3CA protein, humanPIK3R1 protein, humanReceptors, Estrogen

Identifiers

PMID30181556
PMCPMC6123466
OpenAlexW2781715103

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.