Evidence map›Paper›PMID 30181159›Full record

ArticleDiabetes2018

Type 2 Diabetes-Associated Genetic Variants Regulate Chromatin Accessibility in Human Islets.

Shubham Khetan, Romy Kursawe, Ahrim Youn, Nathan Lawlor, Alexandria Jillette, Eladio J Marquez, Duygu Ucar, Michael L Stitzel

Open access · bronzeAbstract read
In one paragraph

Article in Diabetes, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed, 1 pooled it
8.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 1 synthesis or guideline pooled it, 67 citations in OpenAlex.

  1. Pooled it
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  5. Review
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  14. Computational Analysis of Deleterious nsSNPs inJournal of personalized medicine · 2024
    Article
  15. Article
  16. Metabolic memory: mechanisms and diseases.Signal transduction and targeted therapy · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Shubham KhetanThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Romy KursaweThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Ahrim YounThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Nathan LawlorThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Alexandria JilletteThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Eladio J MarquezThe Jackson Laboratory for Genomic Medicine, Farmington, CT.
Duygu UcarThe Jackson Laboratory for Genomic Medicine, Farmington, CT michael.stitzel@jax.org duygu.ucar@jax.org.
Michael L StitzelThe Jackson Laboratory for Genomic Medicine, Farmington, CT michael.stitzel@jax.org duygu.ucar@jax.org.ORCID 0000-0001-5630-559X
Jackson Laboratory · USUniversity of Connecticut · US

Funding

The Human Islet Distribution Coordinating Center (UC4)UC4DK098085 · NIDDK · BECKMAN RESEARCH INSTITUTE/CITY OF HOPE · PI EVANS-MOLINA, CARMELLA, NILAND, JOYCE CAROL · 2012 to 2017
$25.6M
Investigation of noncoding variation in human pancreatic islets and their developR00DK092251 · NIDDK · JACKSON LABORATORY · PI STITZEL, MICHAEL LEE · 2014 to 2016
$794k
NIDDK NIH HHS K99 DK092251NIDDK NIH HHS R00 DK092251NIDDK NIH HHS UC4 DK098085
6 · The paper itself

Abstract

Type 2 diabetes (T2D) is a complex disorder in which both genetic and environmental risk factors contribute to islet dysfunction and failure. Genome-wide association studies (GWAS) have linked single nucleotide polymorphisms (SNPs), most of which are noncoding, in >200 loci to islet dysfunction and T2D. Identification of the putative causal variants and their target genes and whether they lead to gain or loss of function remains challenging. Here, we profiled chromatin accessibility in pancreatic islet samples from 19 genotyped individuals and identified 2,949 SNPs associated with in vivo

Indexed as

AllelesChromatinDiabetes Mellitus, Type 2Genetic Predisposition to DiseaseGenotypeHumansIslets of LangerhansChromatin

Identifiers

PMID30181159
PMCPMC6198349
OpenAlexW2892207539

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.