Evidence map›Paper›PMID 30181041›Full record

ReviewDNA repair2018

Incomplete base excision repair contributes to cell death from antibiotics and other stresses.

Charley C Gruber, Graham C Walker

Abstract readReview
In one paragraph

Review in DNA repair, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Antibiotic-recalcitrant Salmonella during infection.Nature reviews. Microbiology · 2025
    Review
  6. Review
  7. Article
  8. Review
  9. Article
  10. Article
  11. Bacterial DNA excision repair pathways.Nature reviews. Microbiology · 2022
    Review
  12. Article
  13. Review
  14. When UDG and hAPE1 Meet Cyclopurines. How (5'Molecules (Basel, Switzerland) · 2021
    Article
  15. Article
  16. Article
  17. Review
  18. A multilayered repair system protects the mycobacterial chromosome from endogenous and antibiotic-induced oxidative damage.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Charley C GruberDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, United States.
Graham C WalkerDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, United States. Electronic address: gwalker@mit.edu.
Massachusetts Institute of Technology · US

Funding

MUTAGENESIS AND REPAIR OF DNAR01CA021615 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 1985 to 2019
$6.5M
Mechanism of Eukaryotic Environmental MutagenesisR35ES028303 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 2017 to 2024
$4.2M
Mechanism of Eukaryotic Environmental MutagenesisR01ES015818 · NIEHS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI WALKER, GRAHAM C · 2007 to 2016
$3.8M
NCI NIH HHS R01 CA021615NIEHS NIH HHS R01 ES015818NIEHS NIH HHS R35 ES028303
6 · The paper itself

Abstract

Numerous lethal stresses in bacteria including antibiotics, thymineless death, and MalE-LacZ expression trigger an increase in the production of reactive oxygen species. This results in the oxidation of the nucleotide pool by radicals produced by Fenton chemistry. Following the incorporation of these oxidized nucleotides into the genome, the cell's unsuccessful attempt to repair these lesions through base excision repair (BER) contributes causally to the lethality of these stresses. We review the evidence for this phenomenon of incomplete BER-mediated cell death and discuss how better understanding this pathway could contribute to the development of new antibiotics.

Indexed as

DNA DamageDNA RepairAnimalsAnti-Bacterial AgentsCell DeathDNAEukaryotaHumansOxidative StressReactive Oxygen SpeciesAnti-Bacterial AgentsDNAReactive Oxygen Species8-oxo-dGAntibioticsBase excision repairCell deathReactive oxygen speciesThymineless death

Identifiers

PMID30181041
PMCPMC6442677
OpenAlexW2888563330

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.