Evidence map›Paper›PMID 30179225›Full record

Trial reportThe Journal of clinical investigation2018

Immunogenomic analyses associate immunological alterations with mismatch repair defects in prostate cancer.

Daniel Nava Rodrigues, Pasquale Rescigno, David Liu, Wei Yuan, Suzanne Carreira, Maryou B Lambros, George Seed, Joaquin Mateo, Ruth Riisnaes, Stephanie Mullane and 42 more

Erratum issuedOpen access · hybridAbstract readClinical Trial
In one paragraph

Trial report in The Journal of clinical investigation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 99 papers, 5 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
99citing papers in PubMed, 5 pooled it
19.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

99 citing papers in PubMed, 5 syntheses or guidelines pooled it, 205 citations in OpenAlex.

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39 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

52 authors at 12 institutions in 4 countries.

Daniel Nava RodriguesThe Institute of Cancer Research, London, United Kingdom.
Pasquale RescignoThe Institute of Cancer Research, London, United Kingdom.
David LiuDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Wei YuanThe Institute of Cancer Research, London, United Kingdom.
Suzanne CarreiraThe Institute of Cancer Research, London, United Kingdom.
Maryou B LambrosThe Institute of Cancer Research, London, United Kingdom.
George SeedThe Institute of Cancer Research, London, United Kingdom.
Joaquin MateoThe Institute of Cancer Research, London, United Kingdom.
Ruth RiisnaesThe Institute of Cancer Research, London, United Kingdom.
Stephanie MullaneDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Claire MargolisDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Diana MiaoDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Susana MirandaThe Institute of Cancer Research, London, United Kingdom.
David DollingThe Institute of Cancer Research, London, United Kingdom.
Matthew ClarkeThe Institute of Cancer Research, London, United Kingdom.
Claudia BertanThe Institute of Cancer Research, London, United Kingdom.
Mateus CrespoThe Institute of Cancer Research, London, United Kingdom.
Gunther BoysenThe Institute of Cancer Research, London, United Kingdom.
Ana FerreiraThe Institute of Cancer Research, London, United Kingdom.
Adam SharpThe Institute of Cancer Research, London, United Kingdom.
Ines FigueiredoThe Institute of Cancer Research, London, United Kingdom.
Daniel KeliherDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Saud AldubayanDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Kelly P BurkeDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Semini SumanasuriyaThe Institute of Cancer Research, London, United Kingdom.
Mariane Sousa FontesThe Institute of Cancer Research, London, United Kingdom.
Diletta BianchiniThe Institute of Cancer Research, London, United Kingdom.
Zafeiris ZafeiriouThe Institute of Cancer Research, London, United Kingdom.
Larissa Sena Teixeira MendesThe Royal Marsden, London, United Kingdom.
Kent MouwDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Michael T SchweizerUniversity of Washington, Seattle, Washington, USA.
Colin C PritchardUniversity of Washington, Seattle, Washington, USA.
Stephen SalipanteUniversity of Washington, Seattle, Washington, USA.
Mary-Ellen TaplinDepartment of Clinical Medicine and Surgery, Department of Translational Medical Sciences, Azienda Ospedaliera Universitaria (AOU) Federico II, Naples, Italy.
Himisha BeltranWeill Medical College of Cornell University, New York, New York, USA.
Mark A RubinWeill Medical College of Cornell University, New York, New York, USA.
Marcin CieslikUniversity of Michigan Medical School, Ann Arbor, Michigan, USA.
Dan RobinsonUniversity of Michigan Medical School, Ann Arbor, Michigan, USA.
Elizabeth HeathKarmanos Cancer Institute, Detroit, Michigan, USA.
Nikolaus SchultzMemorial Sloan Kettering Cancer Center, New York, New York, USA.
Joshua ArmeniaMemorial Sloan Kettering Cancer Center, New York, New York, USA.
Wassim AbidaMemorial Sloan Kettering Cancer Center, New York, New York, USA.
Howard ScherMemorial Sloan Kettering Cancer Center, New York, New York, USA.
Christopher LordThe Institute of Cancer Research, London, United Kingdom.
Alan D'AndreaDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Charles L SawyersMemorial Sloan Kettering Cancer Center, New York, New York, USA.
Arul M ChinnaiyanUniversity of Michigan Medical School, Ann Arbor, Michigan, USA.
Andrea AlimontiInstitute of Oncology Research (IOR), Bellinzona and Faculty of Biomedical Sciences, Università della Svizzera Italiana, Bellinzona, Switzerland.
Peter S NelsonUniversity of Washington, Seattle, Washington, USA.
Charles G DrakeColumbia University Medical Center, New York, New York, USA.
Eliezer M Van AllenDepartment of Medical Oncology, Dana-Farber Cancer Institute, Boston, Massachusetts, USA.
Johann S de BonoThe Institute of Cancer Research, London, United Kingdom.
Institute of Cancer Research · GBBroad Institute · USMemorial Sloan Kettering Cancer Center · USUniversity of Washington · USDana-Farber Cancer Institute · USUniversity of Michigan · USCornell University · USColumbia University Irving Medical Center · USFederico II University Hospital · ITRoyal Marsden Hospital · GBThe Barbara Ann Karmanos Cancer Institute · USUniversità della Svizzera italiana · CH

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
Harvard Clinical and Translational Science CenterUL1TR001102 · NCATS · HARVARD MEDICAL SCHOOL · PI NADLER, LEE MARSHALL · 2013 to 2017
$106.2M
SPORE In Prostate CancerP50CA092629 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Yu Chen, MICHAEL J MORRIS · 2001 to 2026
$63.0M
The MSKCC-UW/Fred Hutch Prostate Cancer Drug Resistance and Sensitivity CenterU54CA224079 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2017 to 2021
$6.8M
Understanding Resistance to Next Generation AntiandrogensR01CA155169 · NCI · SLOAN-KETTERING INST CAN RESEARCH · PI SAWYERS, CHARLES L. · 2012 to 2022
$3.8M
Resistance to Emerging Androgen Deprivation Therapies in Prostate CancerK08CA188615 · NCI · DANA-FARBER CANCER INST · PI VAN ALLEN, ELIEZER M · 2014 to 2017
$708k
NCATS NIH HHS UL1 TR001102NCI NIH HHS K08 CA188615NCI NIH HHS P30 CA008748NCI NIH HHS P50 CA092629NCI NIH HHS R01 CA155169NCI NIH HHS U54 CA224079
6 · The paper itself

Abstract

backgroundUnderstanding the integrated immunogenomic landscape of advanced prostate cancer (APC) could impact stratified treatment selection.

methodsDefective mismatch repair (dMMR) status was determined by either loss of mismatch repair protein expression on IHC or microsatellite instability (MSI) by PCR in 127 APC biopsies from 124 patients (Royal Marsden [RMH] cohort); MSI by targeted panel next-generation sequencing (MSINGS) was then evaluated in the same cohort and in 254 APC samples from the Stand Up To Cancer/Prostate Cancer Foundation (SU2C/PCF). Whole exome sequencing (WES) data from this latter cohort were analyzed for pathogenic MMR gene variants, mutational load, and mutational signatures. Transcriptomic data, available for 168 samples, was also performed.

resultsOverall, 8.1% of patients in the RMH cohort had some evidence of dMMR, which associated with decreased overall survival. Higher MSINGS scores associated with dMMR, and these APCs were enriched for higher T cell infiltration and PD-L1 protein expression. Exome MSINGS scores strongly correlated with targeted panel MSINGS scores (r = 0.73, P < 0.0001), and higher MSINGS scores associated with dMMR mutational signatures in APC exomes. dMMR mutational signatures also associated with MMR gene mutations and increased immune cell, immune checkpoint, and T cell-associated transcripts. APC with dMMR mutational signatures overexpressed a variety of immune transcripts, including CD200R1, BTLA, PD-L1, PD-L2, ADORA2A, PIK3CG, and TIGIT.

conclusionThese data could impact immune target selection, combination therapeutic strategy selection, and selection of predictive biomarkers for immunotherapy in APC.

fundingWe acknowledge funding support from Movember, Prostate Cancer UK, The Prostate Cancer Foundation, SU2C, and Cancer Research UK.

Indexed as

B7-H1 AntigenDNA Mismatch RepairImmunotherapyMicrosatellite InstabilityMutationNeoplasm ProteinsProstatic NeoplasmsAdultAgedHigh-Throughput Nucleotide SequencingHumansMaleMiddle AgedB7-H1 AntigenCD274 protein, humanNeoplasm ProteinsCancer immunotherapyDNA repairGeneticsOncologyProstate cancer

Identifiers

PMID30179225
PMCPMC6159966
OpenAlexW2892128235

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.