ArticleJournal of synchrotron radiation2018
Tomosaic: efficient acquisition and reconstruction of teravoxel tomography data using limited-size synchrotron X-ray beams.
Article in Journal of synchrotron radiation, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.
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Who cites it
14 citing papers in PubMed, 69 citations in OpenAlex.
- Distributed computing for the reconstruction of multi-terabyte tomographic X-ray imaging datasets.Journal of synchrotron radiation · 2026Article
- Synchrotron Radiation-Based Tomography of an Entire Mouse Brain with Sub-Micron Voxels: Augmenting Interactive Brain Atlases with Terabyte Data.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Laminography as a tool for imaging large-size samples with high resolution.Journal of synchrotron radiation · 2024Article
- Synchrotron-source micro-x-ray computed tomography for examining butterfly eyes.Ecology and evolution · 2024Article
- Towards full-stack deep learning-empowered data processing pipeline for synchrotron tomography experiments.Innovation (Cambridge (Mass.)) · 2024Review
- TomocuPy - efficient GPU-based tomographic reconstruction with asynchronous data processing.Journal of synchrotron radiation · 2023Article
- Comparative hard x-ray tomography for virtual histology of zebrafish larva, human tooth cementum, and porcine nerve.Journal of medical imaging (Bellingham, Wash.) · 2022Article
- A wide-field micro-computed tomography detector: micron resolution at half-centimetre scale.Journal of synchrotron radiation · 2022Article
- Multi-modal imaging of a single mouse brain over five orders of magnitude of resolution.NeuroImage · 2021Article
- Upscaling X-ray nanoimaging to macroscopic specimens.Journal of applied crystallography · 2021Review
- Adorym: a multi-platform generic X-ray image reconstruction framework based on automatic differentiation.Optics express · 2021Article
- Micrometer-resolution X-ray tomographic full-volume reconstruction of an intact post-mortem juvenile rat lung.Histochemistry and cell biology · 2021Article
- A three-dimensional thalamocortical dataset for characterizing brain heterogeneity.Scientific data · 2020Article
- Comparison of distributed memory algorithms for X-ray wave propagation in inhomogeneous media.Optics express · 2020Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
Abstract
X-rays offer high penetration with the potential for tomography of centimetre-sized specimens, but synchrotron beamlines often provide illumination that is only millimetres wide. Here an approach is demonstrated termed Tomosaic for tomographic imaging of large samples that extend beyond the illumination field of view of an X-ray imaging system. This includes software modules for image stitching and calibration, while making use of existing modules available in other packages for alignment and reconstruction. The approach is compatible with conventional beamline hardware, while providing a dose-efficient method of data acquisition. By using parallelization on a distributed computing system, it provides a solution for handling teravoxel-sized or larger datasets that cannot be processed on a single workstation in a reasonable time. Using experimental data, the package is shown to provide good quality three-dimensional reconstruction for centimetre-sized samples with sub-micrometre pixel size.
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