Evidence map›Paper›PMID 30178802›Full record

ArticleLab on a chip2018

Integrated measurement of intracellular proteins and transcripts in single cells.

Alexander M Xu, Qianhe Liu, Kaitlyn L Takata, Sarah Jeoung, Yapeng Su, Igor Antoshechkin, Sisi Chen, Matthew Thomson, James R Heath

Open access · greenAbstract read
In one paragraph

Article in Lab on a chip, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 21 citations in OpenAlex.

  1. Article
  2. Review
  3. The Intriguing Landscape of Single-Cell Protein Analysis.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2022
    Review
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 2 countries.

Alexander M XuCalifornia Institute of Techology, Division of Chemistry and Chemical Engineering, Pasadena, CA, USA.
Qianhe Liu
Kaitlyn L Takata
Sarah Jeoung
Yapeng Su
Igor Antoshechkin
Sisi Chen
Matthew Thomson
James R Heath
Pasadena City College · US

Funding

Repurposing of cancer therapeutics for treatment of patients with COVID-19 diseaseU54CA199090 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI HEATH, JAMES R., RIBAS, ANTONI · 2015 to 2020
$11.4M
Quantitative models for controlling collective cell fate selection in stem cellsDP5OD012194 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI THOMSON, MATTHEW W. · 2012 to 2016
$1.8M
Simultaneous Detection of Proteins and Whole Transcriptomes in Single CellsF32CA213966 · NCI · INSTITUTE FOR SYSTEMS BIOLOGY · PI XU, ALEXANDER · 2017 to 2019
$179k
NCI NIH HHS F32 CA213966NCI NIH HHS U54 CA199090NIH HHS DP5 OD012194
6 · The paper itself

Abstract

Biological function arises from the interplay of proteins, transcripts, and metabolites. An ongoing revolution in miniaturization technologies has created tools to analyze any one of these species in single cells, thus resolving the heterogeneity of tissues previously invisible to bulk measurements. An emerging frontier is single cell multi-omics, which is the measurement of multiple classes of analytes from single cells. Here, we combine bead-based transcriptomics with microchip-based proteomics to measure intracellular proteins and transcripts from single cells and defined small numbers of cells. The transcripts and proteins are independently measured by sequencing and fluorescent immunoassays respectively, to preserve their optimal measurement modes, and linked by encoding the physical address locations of the cells into digital sequencing space using spatially patterned DNA barcodes. We resolve cell-type-specific protein and transcript signatures and present a path forward to scaling the platform to high-throughput.

Indexed as

Gene Expression ProfilingLab-On-A-Chip DevicesEquipment DesignIntracellular SpaceProteomicsRNA, MessengerSingle-Cell AnalysisRNA, Messenger

Identifiers

PMID30178802
PMCPMC6752714
OpenAlexW2888180910

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.