Evidence map›Paper›PMID 30177768›Full record

ArticleScientific reports2018

Regulating exopolysaccharide gene wcaF allows control of Escherichia coli biofilm formation.

Jingyun Zhang, Chueh Loo Poh

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 41 citations in OpenAlex.

  1. Review
  2. Article
  3. Diagnostics (Basel, Switzerland) · 2024
    Article
  4. Molecular Aspects of the Functioning of Pathogenic Bacteria Biofilm Based onInternational journal of molecular sciences · 2024
    Review
  5. Review
  6. Review
  7. Identification of differences in gene expression implicated in the Adherent-InvasiveFrontiers in cellular and infection microbiology · 2023
    Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. Review
  13. Review
  14. Article
  15. Pyruvate Substitutions on Glycoconjugates.International journal of molecular sciences · 2019
    Review
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Jingyun ZhangDepartment of Biomedical Engineering, Faculty of Engineering, National University of Singapore, 117583, 4 Engineering Drive 3, Singapore, Singapore.
Chueh Loo PohDepartment of Biomedical Engineering, Faculty of Engineering, National University of Singapore, 117583, 4 Engineering Drive 3, Singapore, Singapore. poh.chuehloo@nus.edu.sg.ORCID 0000-0001-5312-2835
National University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

While biofilms are known to cause problems in many areas of human health and the industry, biofilms are important in a number of engineering applications including wastewater management, bioremediation, and bioproduction of valuable chemicals. However, excessive biofilm growth remains a key challenge in the use of biofilms in these applications. As certain amount of biofilm growth is required for efficient use of biofilms, the ability to control and maintain biofilms at desired thickness is vital. To this end, we developed synthetic gene circuits to control E. coli MG1655 biofilm formation by using CRISPRi/dCas9 to regulate a gene (wcaF) involved in the synthesis of colanic acid (CA), a key polysaccharide in E. coli biofilm extracellular polymeric substance (EPS). We showed that the biofilm formation was inhibited when wcaF was repressed and the biofilms could be maintained at a different thickness over a period of time. We also demonstrated that it is also possible to control the biofilm thickness spatially by inhibiting wcaF gene using a genetic light switch. The results demonstrate that the approach has great potential as a new means to control and maintain biofilm thickness in biofilm related applications.

Indexed as

Gene Expression Regulation, BacterialAcyltransferasesBacterial ProteinsBiofilmsCRISPR-Associated Protein 9CRISPR-Cas SystemsEscherichia coliGene EditingGenetic EngineeringPlasmidsPolysaccharidesPolysaccharides, BacterialRNA, Guide, CRISPR-Cas SystemsAcyltransferasesBacterial Proteinscolanic acidCRISPR-Associated Protein 9PolysaccharidesPolysaccharides, BacterialRNA, Guide, CRISPR-Cas Systems

Identifiers

PMID30177768
PMCPMC6120894
OpenAlexW2888791622

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.