Evidence map›Paper›PMID 30174311›Full record

ArticleCell chemical biology2018

Translational Reprogramming Provides a Blueprint for Cellular Adaptation.

Max Berman Ferretti, Jennifer Louise Barre, Katrin Karbstein

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  3. Ribosome Structural Changes Dynamically Affect Ribosome Function.International journal of molecular sciences · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Max Berman FerrettiDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA.
Jennifer Louise BarreDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA; The Benjamin School, Palm Beach Gardens, FL 33418, USA.
Katrin KarbsteinDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, Jupiter, FL 33458, USA; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA. Electronic address: kkarbst@scripps.edu.
Scripps Research Institute · USHoward Hughes Medical Institute · US

Funding

Quality Control in Ribosome Assembly - the Function of Regulatory ProteinsR01GM086451 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KARBSTEIN, KATRIN · 2009 to 2019
$4.8M
Understanding the basis of mRNA selectivity using ribosomes lacking Rps26F31GM116406 · NIGMS · SCRIPPS FLORIDA · PI FERRETTI, MAX · 2016 to 2017
$62k
Howard Hughes Medical InstituteNIGMS NIH HHS F31 GM116406NIGMS NIH HHS R01 GM086451
6 · The paper itself

Abstract

Consistent with its location on the ribosome, reporter assays demonstrate a role for Rps26 in recognition of the Kozak sequence. Consequently, Rps26-deficient ribosomes display preference for mRNAs encoding components of the high salt and high pH stress response pathways and accumulate in yeast exposed to high salt or pH. Here we use this information to reprogram the cellular response to high salt by introducing point mutations in the Kozak sequence of key regulators for the cell wall MAP-kinase, filamentation, or DNA repair pathways. This stimulates their translation upon genetic, or salt-induced Rps26 depletion from ribosomes. Stress resistance assays show activation of the targeted pathways in an Rps26- and salt-dependent manner. Genomic alterations in diverse yeast populations indicate that analogous tuning occurs during adaptation to ecological niches. Thus, evolution shapes translational control across the genome by taking advantage of the accumulation of diverse ribosome populations.

Indexed as

Gene Expression Regulation, FungalProtein BiosynthesisSalt StressGene DeletionPoint MutationRibosomal ProteinsRibosomesRNA, MessengerSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSignal TransductionRibosomal ProteinsRNA, MessengerRPS26A protein, S cerevisiaeSaccharomyces cerevisiae ProteinseS26ribosome heterogeneityribo-tuningRps26specialized ribosomestranslational control

Identifiers

PMID30174311
PMCPMC6239892
OpenAlexW2888797665

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.