Evidence map›Paper›PMID 30174310›Full record

ArticleCell chemical biology2018

The High Genetic Barrier of EFdA/MK-8591 Stems from Strong Interactions with the Active Site of Drug-Resistant HIV-1 Reverse Transcriptase.

Yuki Takamatsu, Debananda Das, Satoru Kohgo, Hironori Hayashi, Nicole S Delino, Stefan G Sarafianos, Hiroaki Mitsuya, Kenji Maeda

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 30 citations in OpenAlex.

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  12. Management of Virologic Failure and HIV Drug Resistance.Infectious disease clinics of North America · 2019
    Review
  13. Novel Protease Inhibitors Containing C-5-ModifiedAntimicrobial agents and chemotherapy · 2019
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 2 countries.

Yuki TakamatsuExperimental Retrovirology Section, HIV and AIDS Malignancy Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-1868, USA.
Debananda DasExperimental Retrovirology Section, HIV and AIDS Malignancy Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-1868, USA.
Satoru KohgoDepartment of Refractory Viral Infection, National Center for Global Health and Medicine Research Institute, 1-21-1 Toyama Shinjuku, Tokyo 162-8655, Japan; Faculty of Pharmaceutical Sciences, Sojo University, Kumamoto 860-0082, Japan.
Hironori HayashiDepartment of Refractory Viral Infection, National Center for Global Health and Medicine Research Institute, 1-21-1 Toyama Shinjuku, Tokyo 162-8655, Japan.
Nicole S DelinoExperimental Retrovirology Section, HIV and AIDS Malignancy Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-1868, USA; Department of Refractory Viral Infection, National Center for Global Health and Medicine Research Institute, 1-21-1 Toyama Shinjuku, Tokyo 162-8655, Japan.
Stefan G SarafianosLaboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA 30307, USA.
Hiroaki MitsuyaExperimental Retrovirology Section, HIV and AIDS Malignancy Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-1868, USA; Department of Refractory Viral Infection, National Center for Global Health and Medicine Research Institute, 1-21-1 Toyama Shinjuku, Tokyo 162-8655, Japan; Department of Hematology, Rheumatology and Infectious Disease, Kumamoto University Graduate School of Biomedical Sciences, Kumamoto 860-0811, Japan.
Kenji MaedaExperimental Retrovirology Section, HIV and AIDS Malignancy Branch, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892-1868, USA; Department of Refractory Viral Infection, National Center for Global Health and Medicine Research Institute, 1-21-1 Toyama Shinjuku, Tokyo 162-8655, Japan. Electronic address: kmaeda@ri.ncgm.go.jp.
National Center for Global Health and Medicine · JPNational Cancer Institute · USEmory University · USNational Institutes of Health · USSojo University · JP

Funding

Development of Antiviral Therapy of HIV-1 InfectionZIASC006738 · NCI · DIVISION OF CLINICAL SCIENCES - NCI · PI MITSUYA, HIROAKI · 2009 to 2025
$10.0M
Ultrapotent Inhibitors of Wild-type and Multi-drug Resistant HIVR01AI076119 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI SARAFIANOS, STEFAN G · 2008 to 2018
$4.1M
Ultrapotent Inhibitors of Wild-type and Multi-drug Resistant HIVR37AI076119 · NIAID · EMORY UNIVERSITY · PI Stefan G Sarafianos · 2020 to 2026
$3.6M
Development of Novel Agents Active against Hepatitis B VirusZIABC011486 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MITSUYA, HIROAKI · 2013 to 2025
$3.0M
HIV TRIALSZ01SC006738 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI MITSUYA, HIROAKI · 1996 to 2008
$1.4M
Capsid-Targeting Small Molecules Blocking HIV through Novel Mechanism of ActionR21AI112417 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI SARAFIANOS, STEFAN G · 2014 to 2015
$414k
Structural Analysis of Antiviral Activity of Novel Agents against HIVZIABC011880 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI MITSUYA, HIROAKI · 2019 to 2019
$250k
Intramural NIH HHS Z01 SC006738Intramural NIH HHS ZIA BC011486Intramural NIH HHS ZIA SC006738NIAID NIH HHS R01 AI076119NIAID NIH HHS R21 AI112417NIAID NIH HHS R37 AI076119
6 · The paper itself

Abstract

4'-Ethynyl-2-fluoro-2'-deoxyadenosine (EFdA/MK-8591), a nucleoside reverse transcriptase inhibitor (NRTI) under clinical trials, is a potent and promising long-acting anti-HIV type 1 (HIV-1) agent. EFdA and its derivatives possess a modified 4'-moiety and potently inhibit the replication of a wide spectrum of HIV-1 strains resistant to existing NRTIs. Here, we report that EFdA and NRTIs with a 4'-ethynyl- or 4'-cyano-moiety exerted activity against HIV-1 with an M184V mutation and multiple NRTI-resistant HIV-1s, whereas NRTIs with other moieties (e.g., 4'-methyl) did not show this activity. Structural analysis indicated that EFdA and 4'-ethynyl-NRTIs (but not other 4'-modified NRTIs), formed strong van der Waals interactions with critical amino acid residues of reverse transcriptase. Such interactions were maintained even in the presence of a broad resistance-endowing M184V substitution, thus potently inhibiting drug-resistant HIV-1 strains. These findings also explain the mechanism for the potency of EFdA and provide insights for further design of anti-HIV-1 therapeutics.

Indexed as

Drug Resistance, ViralPoint MutationCatalytic DomainCell LineDeoxyadenosinesHEK293 CellsHIV-1HIV InfectionsHIV Reverse TranscriptaseHumansMolecular Docking SimulationReverse Transcriptase InhibitorsDeoxyadenosinesHIV Reverse Transcriptaseislatravirreverse transcriptase, Human immunodeficiency virus 1Reverse Transcriptase Inhibitors4ʹ-cyano4ʹ-ethynyl4′-ethynyl-2-fluoro-2′-deoxyadenosine (EFdA/MK-8591)drug resistanceHIV type 1 (HIV-1)nucleoside reverse transcriptase inhibitor (NRTI)reverse transcriptase

Identifiers

PMID30174310
PMCPMC6261781
OpenAlexW2889080666

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.