Evidence map›Paper›PMID 30174241›Full record

ArticleCancer cell2018

Epigenetic and Transcriptomic Profiling of Mammary Gland Development and Tumor Models Disclose Regulators of Cell State Plasticity.

Christopher Dravis, Chi-Yeh Chung, Nikki K Lytle, Jaslem Herrera-Valdez, Gidsela Luna, Christy L Trejo, Tannishtha Reya, Geoffrey M Wahl

Open access · bronzeAbstract read
In one paragraph

Article in Cancer cell, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
7.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 138 citations in OpenAlex.

  1. Review
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  5. [Application progress of single-cell RNA sequencing technology in breast development and related diseases].Zhong nan da xue xue bao. Yi xue ban = Journal of Central South University. Medical sciences · 2025
    Review
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28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Christopher DravisGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA. Electronic address: cdravis@salk.edu.
Chi-Yeh ChungGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Nikki K LytleSanford Consortium for Regenerative Medicine, La Jolla, CA 92037, USA; Departments of Pharmacology and Medicine, Moores Cancer Center, University of California San Diego School of Medicine, La Jolla, CA 92037, USA.
Jaslem Herrera-ValdezGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Gidsela LunaGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Christy L TrejoGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA.
Tannishtha ReyaSanford Consortium for Regenerative Medicine, La Jolla, CA 92037, USA; Departments of Pharmacology and Medicine, Moores Cancer Center, University of California San Diego School of Medicine, La Jolla, CA 92037, USA.
Geoffrey M WahlGene Expression Laboratory, Salk Institute for Biological Studies, La Jolla, CA 92037, USA. Electronic address: wahl@salk.edu.
Salk Institute for Biological Studies · USUniversity of California San Diego · US

Funding

Viral Vector Core (VVC)P30CA014195 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI Ye Zheng · 1985 to 2026
$82.8M
GRADUATE TRAINING IN CELLULAR &MOLECULAR PHARMACOLOGYT32GM007752 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BROWN, JOAN HELLER, HANDEL, TRACY M · 1985 to 2023
$13.5M
Molecular strategies for early detection and targeting of cancerR35CA197699 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Tannishtha Reya · 2015 to 2026
$11.2M
Combining single cell approaches and a developmental perspective to discover stem cell control circuits and the cellular and molecular bases of cancer heterogeneityR35CA197687 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI WAHL, GEOFFREY MYLES · 2015 to 2021
$7.8M
Musashi-mediated control of pancreatic cancer growth and progressionR01CA186043 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LOWY, ANDREW M, REYA, TANNISHTHA · 2015 to 2019
$2.1M
Profiling a Novel Population of Fetal Mammary Stem CellsF32CA174430 · NCI · SALK INSTITUTE FOR BIOLOGICAL STUDIES · PI DRAVIS, CHRISTOPHER PARKS · 2013 to 2014
$115k
Stem cell signals in pancreatic adenocarcinoma metastasis and therapy resistanceF31CA206416 · NCI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI LYTLE, NIKKI KATHERINE · 2016 to 2017
$75k
NCI NIH HHS F31 CA206416NCI NIH HHS F32 CA174430NCI NIH HHS P30 CA014195NCI NIH HHS R01 CA186043NCI NIH HHS R35 CA197687NCI NIH HHS R35 CA197699NIGMS NIH HHS T32 GM007752
6 · The paper itself

Abstract

Cell state reprogramming during tumor progression complicates accurate diagnosis, compromises therapeutic effectiveness, and fuels metastatic dissemination. We used chromatin accessibility assays and transcriptional profiling during mammary development as an agnostic approach to identify factors that mediate cancer cell state interconversions. We show that fetal and adult basal cells share epigenetic features consistent with multi-lineage differentiation potential. We find that DNA-binding motifs for SOX transcription factors are enriched in chromatin that is accessible in stem/progenitor cells and inaccessible in differentiated cells. In both mouse and human tumors, SOX10 expression correlates with stem/progenitor identity, dedifferentiation, and invasive characteristics. Strikingly, we demonstrate that SOX10 binds to genes that regulate neural crest cell identity, and that SOX10-positive tumor cells exhibit neural crest cell features.

Indexed as

AdultAnimalsBreast NeoplasmsCell DifferentiationCell Line, TumorCell PlasticityCell Transformation, NeoplasticEmbryo, MammalianEpigenesis, GeneticFemaleGene Expression ProfilingGene Expression Regulation, NeoplasticHumansMammary Glands, AnimalMammary Glands, HumanMammary Neoplasms, ExperimentalSOX10 protein, humanSox10 protein, mouseSOXE Transcription Factorsbreast cancercancer stem cellscell state plasticityintra-tumoral heterogeneitymammary gland developmentmammary stem cellsmetastasisneural crest cellstriple-negative breast cancer

Identifiers

PMID30174241
PMCPMC6152943
OpenAlexW2805664667

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.