Evidence map›Paper›PMID 30173887›Full record

ArticleBiophysical journal2018

Charge Interactions Can Dominate Coupled Folding and Binding on the Ribosome.

Jacopo Marino, Karin J Buholzer, Franziska Zosel, Daniel Nettels, Benjamin Schuler

Abstract read
In one paragraph

Article in Biophysical journal, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Article
  2. Folding-upon-binding pathways of an intrinsically disordered protein from a deep Markov state model.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. How the ribosome shapes cotranslational protein folding.Current opinion in structural biology · 2024
    Review
  4. Article
  5. Review
  6. Co-Translational Folding of Multi-Domain Proteins.Frontiers in molecular biosciences · 2022
    Review
  7. Common sequence motifs of nascent chains engage the ribosome surface and trigger factor.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jacopo MarinoDepartment of Biochemistry, University of Zurich, Zurich, Switzerland; Laboratory of Biomolecular Research, Paul Scherrer Institute, Villigen PSI, Switzerland. Electronic address: jacopo.marino@psi.ch.
Karin J BuholzerDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Franziska ZoselDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Daniel NettelsDepartment of Biochemistry, University of Zurich, Zurich, Switzerland.
Benjamin SchulerDepartment of Biochemistry, University of Zurich, Zurich, Switzerland; Department of Physics, University of Zurich, Zurich, Switzerland. Electronic address: schuler@bioc.uzh.ch.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Interactions between emerging nascent polypeptide chains and the ribosome can modulate cotranslational protein folding. However, it has remained unclear how such interactions can affect the binding of nascent chains to their cellular targets. We thus investigated on the ribosome the interaction between two intrinsically disordered proteins of opposite charge, ACTR and NCBD, which form a high-affinity complex in a coupled folding-and-binding reaction. Using fluorescence correlation spectroscopy and arrest-peptide-mediated force measurements in vitro and in vivo, we find that the ACTR-NCBD complex can form cotranslationally but only with ACTR as the nascent chain and NCBD free in solution, not vice versa. We show that this surprising asymmetry in behavior is caused by pronounced charge interactions: attraction of the positively charged nascent chain of NCBD to the negatively charged ribosomal surface competes with complex formation and prevents ACTR binding. In contrast, the negatively charged nascent ACTR is repelled by the ribosomal surface and thus remains available for productively binding its partner. Electrostatic interactions may thus be more important for cotranslational folding and binding than previously thought.

Indexed as

Protein FoldingModels, MolecularNuclear Receptor Coactivator 3Protein DomainsRibosomesNuclear Receptor Coactivator 3

Identifiers

PMID30173887
PMCPMC6139605

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.