Evidence map›Paper›PMID 30171650›Full record

ArticleProtein science : a publication of the Protein Society2019

Not as easy as π: An insertional residue does not explain the π-helix gain-of-function in two-component FMN reductases.

Jeffrey S McFarlane, Richard A Hagen, Annemarie S Chilton, Dianna L Forbes, Audrey L Lamb, Holly R Ellis

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 4 citations in OpenAlex.

  1. The role of π-helices in TRP channel gating.Current opinion in structural biology · 2019
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jeffrey S McFarlaneThe Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.
Richard A HagenThe Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama, 36849.
Annemarie S ChiltonThe Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.
Dianna L ForbesThe Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama, 36849.
Audrey L LambThe Department of Molecular Biosciences, University of Kansas, Lawrence, Kansas, 66045.
Holly R EllisThe Department of Chemistry and Biochemistry, Auburn University, Auburn, Alabama, 36849.ORCID 0000-0003-0521-422X
Auburn University · USUniversity of Kansas · US

Funding

X-ray Absorption Spectroscopy (XAS) pp.711-759P41GM103393 · NIGMS · STANFORD UNIVERSITY · PI HODGSON, KEITH O · 2012 to 2019
$30.6M
TRAINING GRANT IN DYNAMIC ASPECTS OF CHEMICAL BIOLOGYT32GM008545 · NIGMS · UNIVERSITY OF KANSAS LAWRENCE · PI LAMB, AUDREY L · 1994 to 2019
$4.9M
American Heart Association-American Stroke Association (18PRE33960374)NIGMS NIH HHS P41 GM103393NIGMS NIH HHS (T32 GM008545)NIGMS NIH HHS T32 GM008545
6 · The paper itself

Abstract

The π-helix located at the tetramer interface of two-component FMN-dependent reductases contributes to the structural divergence from canonical FMN-bound reductases within the NADPH:FMN reductase family. The π-helix in the SsuE FMN-dependent reductase of the alkanesulfonate monooxygenase system has been proposed to be generated by the insertion of a Tyr residue in the conserved α4-helix. Variants of Tyr118 were generated, and their X-ray crystal structures determined, to evaluate how these alterations affect the structural integrity of the π-helix. The structure of the Y118A SsuE π-helix was converted to an α-helix, similar to the FMN-bound members of the NADPH:FMN reductase family. Although the π-helix was altered, the FMN binding region remained unchanged. Conversely, deletion of Tyr118 disrupted the secondary structural properties of the π-helix, generating a random coil region in the middle of helix 4. Both the Y118A and Δ118 SsuE SsuE variants crystallize as a dimer. The MsuE FMN reductase involved in the desulfonation of methanesulfonates is structurally similar to SsuE, but the π-helix contains a His insertional residue. Exchanging the π-helix insertional residue of each enzyme did not result in equivalent kinetic properties. Structure-based sequence analysis further demonstrated the presence of a similar Tyr residue in an FMN-bound reductase in the NADPH:FMN reductase family that is not sufficient to generate a π-helix. Results from the structural and functional studies of the FMN-dependent reductases suggest that the insertional residue alone is not solely responsible for generating the π-helix, and additional structural adaptions occur to provide the altered gain of function.

Indexed as

Mutation, MissenseProtein MultimerizationAmino Acid SubstitutionBacterial ProteinsCrystallography, X-RayFlavin MononucleotideFMN ReductaseNADPProtein Structure, SecondaryPseudomonas aeruginosaBacterial ProteinsFlavin MononucleotideFMN ReductaseNADPflavin monooxygenasesflavin reductasesMsuDMsuENAD(P)H-FMN reductase familySsuDSsuEtwo-component FMN-dependent systemsπ-helix

Identifiers

PMID30171650
PMCPMC6295896
OpenAlexW2889318863

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.