Evidence map›Paper›PMID 30171610›Full record

ArticleJournal of veterinary pharmacology and therapeutics2019

Identification and quantification of domestic feline cytochrome P450 transcriptome across multiple tissues.

Marike Visser, Kristina L Weber, Leslie A Lyons, Gonzalo Rincon, Dawn M Boothe, Dawn A Merritt

Open access · bronzeAbstract read
In one paragraph

Article in Journal of veterinary pharmacology and therapeutics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
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  5. A genetic polymorphism in P2RYScientific reports · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Marike VisserGlobal Therapeutics Research, VMRD, Zoetis, Kalamazoo, Michigan.ORCID http://orcid.org/0000-0002-4233-7491
Kristina L WeberBioinformatics Field Applications Support, Pacific Biosciences, Menlo Park, California.
Leslie A LyonsDepartment of Veterinary Medicine and Surgery, College of Veterinary Medicine, University of Missouri, Columbia, Missouri.
Gonzalo RinconGenetics R&D, VMRD, Zoetis, Kalamazoo, Michigan.
Dawn M BootheDepartment of Anatomy, Physiology, and Pharmacology, College of Veterinary Medicine, Auburn University, Auburn, Alabama.
Dawn A MerrittLab Sciences, VMRD, Zoetis, Kalamazoo, Michigan.ORCID http://orcid.org/0000-0001-9974-2888
Zoetis (United States) · USAuburn University · USMissouri College · USPacific Biosciences (United States) · US

Funding

Genetic Mapping Resources for Common Mammalian DiseasesR24RR016094 · NCRR · UNIVERSITY OF CALIFORNIA DAVIS · PI LYONS, LESLIE A · 2002 to 2011
$3.0M
Genetic Mapping Resources for Common Mammalian DiseasesR24OD010928 · OD · UNIVERSITY OF MISSOURI-COLUMBIA · PI LYONS, LESLIE A · 2012 to 2015
$911k
National Center for Research Resources R24 RR016094/OD010928NCRR NIH HHS R24 RR016094NIH HHS R24 OD010928Winn Feline Foundation MTW13-010
6 · The paper itself

Abstract

Understanding of cytochrome P450 (CYP) isoform distribution and function in the domestic feline is limited. Only a few studies have defined individual CYP isoforms across metabolically relevant tissues, hampering the ability to predict drug metabolism and potential drug-drug interactions. Using RNA sequencing (RNA-seq), transcriptomes from the 99 Lives Cat Genome Sequencing Initiative databank combined with experimentally acquired whole transcriptome sequencing of healthy, adult male (n = 2) and female (n = 2) domestic felines, expression of 42 CYP isoforms were identified in 20 different tissues. Thirty-seven of these isoforms had not been previously reported in cats. Depending on the tissue, three to twenty-nine CYP isoform transcripts were expressed. The feline genome annotations did not differentiate CYP2E1 and 2E2 genes, demonstrating poor annotation for this gene using the reference genome. As the majority of the sequences are based on automated pipelines, complete cDNA sequences for translation into CYP protein sequences could not be determined. This study is the first to identify and characterize 37 additional CYP isoforms in feline tissues, increasing the number of identified CYP from the previously reported seven isoforms to 42 across 20 tissues.

Indexed as

AnimalsCat DiseasesCatsCytochrome P-450 Enzyme SystemFemaleGene Expression ProfilingGenomeMaleProtein IsoformsSequence Analysis, RNATissue DistributionCytochrome P-450 Enzyme SystemProtein Isoforms99 lives cat genome sequencing initiativecytochrome P450felineRNA-seq

Identifiers

PMID30171610
PMCPMC6322962
OpenAlexW2889211228

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.