Evidence map›Paper›PMID 30171474›Full record

ArticleMolecular biology reports2018

Full sequence of the coat protein gene is required for the induction of pathogen-derived resistance against sugarcane mosaic virus in transgenic sugarcane.

Retnosari Apriasti, Suvia Widyaningrum, Weny N Hidayati, Widhi D Sawitri, Nurmalasari Darsono, Toshiharu Hase, Bambang Sugiharto

Abstract read
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In one paragraph

Article in Molecular biology reports, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 35 citations in OpenAlex.

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  9. Cloning, transformation and expression of cell cycle-associated protein kinaseJournal, genetic engineering & biotechnology · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 2 countries.

Retnosari ApriastiPostgraduate Program for Biotechnology, University of Jember, Jember, Indonesia.ORCID http://orcid.org/0000-0002-3524-0616
Suvia WidyaningrumPostgraduate Program for Biotechnology, University of Jember, Jember, Indonesia.ORCID http://orcid.org/0000-0003-2357-5782
Weny N HidayatiPostgraduate Program for Biotechnology, University of Jember, Jember, Indonesia.
Widhi D SawitriPostgraduate Program for Biotechnology, University of Jember, Jember, Indonesia.ORCID http://orcid.org/0000-0002-8650-1564
Nurmalasari DarsonoDivision of Biotechnology, PT. Perkebunan Nusantara XI, Surabaya, Indonesia.ORCID http://orcid.org/0000-0002-9134-5682
Toshiharu HaseDivision of Protein Chemistry, Institute for Protein Research, Osaka University, Suita, Osaka, Japan.ORCID http://orcid.org/0000-0002-0631-3900
Bambang SugihartoCenter for Development of Advanced Science and Technology (CDAST), University of Jember, Jl. Kalimantan No 37, Kampus Tegalboto, Jember, 68121, Indonesia. sugiharto.fmipa@unej.ac.id.ORCID http://orcid.org/0000-0002-8125-1893
Universitas Jember · IDProtein Research Foundation · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sugarcane mosaic virus (SCMV) is a plant pathogenic virus of the family Potyviridae that causes chlorosis, stunting and significantly reduced sugar productivity in sugarcane. Pathogen-derived resistance is a method used to develop SCMV-resistant sugarcane by overexpression of viral DNA. In this study, the gene encoding the coat protein (CP) of SCMV was amplified by reverse transcriptase PCR from symptomatic sugarcane leaves and used to generate transgenic sugarcane. Nucleotide sequence analysis of amplified cDNA indicated that the 998-bp-long cDNA, termed ScMVCp cDNA, codes for the CP of SCMV from the PS881 isolate. The ScMVCp cDNA was inserted into the binary vector pRI101-ON with two constructs, a full nucleotide sequence (p927) and a sequence coding for N-terminally truncated protein (p702). The constructs were then introduced into sugarcane using Agrobacterium-mediated transformation. Southern blot analysis showed a single hybridized DNA copy inserted into the genome of transgenic sugarcane lines. The inserted genes were expressed at both the RNA transcript and protein levels in the transgenic sugarcane. The highest expression was found in transgenic lines 10, 11 and 13 from the p927 construct. Artificial infection by the virus showed that p927 generated a higher resistance to virus compared with p702. This resistance was passed on to the second generation of transgenic sugarcane with 100 and 20-40% levels of resistance in the p927 and p702 transgenic lines, respectively. This report shows that the full sequence of the CP gene is required to disrupt viral assembly and packaging, thereby generating resistance to SCMV infection.

Indexed as

Capsid ProteinsDisease ResistanceOpen Reading FramesPhylogenyPlant DiseasesPlants, Genetically ModifiedPotyvirusSaccharumCapsid ProteinsCoat proteinFull DNA sequenceN-terminal deletionPathogen derived resistanceSCMV-resistant sugarcaneSugarcane mosaic virus

Identifiers

PMID30171474
OpenAlexW2888889179

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.