Evidence map›Paper›PMID 30171419›Full record

ArticleJournal of computer-aided molecular design2018

Identification of protoberberine alkaloids as novel histone methyltransferase G9a inhibitors by structure-based virtual screening.

Jie Chen, Xiao Lin, Kyoung Jin Park, Kang Ro Lee, Hyun-Ju Park

Abstract read
PubMed Publisher
In one paragraph

Article in Journal of computer-aided molecular design, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. EHMT2/G9a as an Epigenetic Target in Pediatric and Adult Brain Tumors.International journal of molecular sciences · 2021
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jie ChenSchool of Pharmacy, Sungkyunkwan University, Suwon, Gyeonggi, 16419, South Korea.
Xiao LinSchool of Pharmacy, Sungkyunkwan University, Suwon, Gyeonggi, 16419, South Korea.
Kyoung Jin ParkSchool of Pharmacy, Sungkyunkwan University, Suwon, Gyeonggi, 16419, South Korea.
Kang Ro LeeSchool of Pharmacy, Sungkyunkwan University, Suwon, Gyeonggi, 16419, South Korea.
Hyun-Ju ParkSchool of Pharmacy, Sungkyunkwan University, Suwon, Gyeonggi, 16419, South Korea. hyunju85@skku.edu.ORCID 0000-0001-6802-1412
Sungkyunkwan University · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The protein lysine methyltransferase G9a, which controls gene expression by epigenetic regulation of H3K9 methylation, is related to various human diseases, including cancer, drug addiction, and mental retardation. In recent years, genetic, biological, and physiological evidence has established G9a inhibitors as potential chemotherapeutic agents for cancer treatment. In this study, we identified protoberberine alkaloid pseudodehydrocorydaline (CT13) as a novel G9a inhibitor, by structure-based virtual screening of in-house library containing natural product compounds. The activity of CT13 was determined by biophysical analyses involving MALDI-TOF mass spectrometry and western blot analysis. CT13 showed selective inhibitory activity against G9a and suppressed the level of H3K9me2 in MCF7 human breast cancer cells. Molecular docking analysis suggested the binding mode of CT13 which occupies the binding site of histone H3 substrate. CT13 provides a novel scaffold for further development of analogous synthetic G9a inhibitors.

Indexed as

Berberine AlkaloidsBinding SitesCell SurvivalHistone MethyltransferasesHistonesHumansMCF-7 CellsMethylationMolecular Docking SimulationProtein BindingSmall Molecule LibrariesSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationStructure-Activity RelationshipBerberine AlkaloidsHistone MethyltransferasesHistonesprotoberberineSmall Molecule LibrariesEpigenetic regulationG9aHistone methyltransferaseNatural protoberberine alkaloidsStructure-based virtual screening

Identifiers

PMID30171419
OpenAlexW2889141363

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.