Evidence map›Paper›PMID 30171177›Full record

ArticleMolecular cancer research : MCR2019

Human Organoids Share Structural and Genetic Features with Primary Pancreatic Adenocarcinoma Tumors.

Isabel Romero-Calvo, Christopher R Weber, Mohana Ray, Miguel Brown, Kori Kirby, Rajib K Nandi, Tiha M Long, Samantha M Sparrow, Andrey Ugolkov, Wenan Qiang and 10 more

3 registry-linked trialsOpen access · bronzeAbstract read
In one paragraph

Article in Molecular cancer research : MCR, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to 3 registered trials, which are not on this map. Cited by 78 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06406608 naunknown statusnot on this mapstarted 2024, after this paper: background citation

Patient-derived Organoid Drug Sensitivity Guided Treatment for Drug-resistant Recurrent Non-Small Cell Lung Cancer

TypeinterventionalSponsorHenan Cancer HospitalRan2024 to 2026Enrolled20ConditionsNon-small Cell Lung CancerArmsChemotherapy and targeted-therapy guided by organoid drug sensitivity test
NCT06406660 naunknown statusnot on this mapstarted 2024, after this paper: background citation

Patient-derived Organoid Drug Sensitivity Guided Treatment for Recurrent Small Cell Lung Cancer

TypeinterventionalSponsorHenan Cancer HospitalRan2024 to 2026Enrolled20ConditionsSmall Cell Lung CancerArmsChemotherapy and targeted-therapy guided by organoid drug sensitivity test
NCT06438055 naunknown statusnot on this mapstarted 2024, after this paper: background citation

Clinical Treatment of Refractory Breast Cancer Based on Organoid Drug Sensitivity Results

TypeinterventionalSponsorTianjin Medical University Cancer Institute and HospitalRan2024 to 2026Enrolled40ConditionsRefractory Breast CancerArmsChemotherapy and targeted-therapy guided by organoid drug sensitivity test
3 · Its place in the literature

Who cites it

78 citing papers in PubMed, 1 synthesis or guideline pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Targeting claudins in cancer.Nature reviews. Drug discovery · 2026
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18 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 4 institutions in 1 country.

Isabel Romero-CalvoInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Christopher R WeberDepartment of Pathology, The University of Chicago Medicine, Chicago, Illinois.ORCID 0000-0002-2117-3184
Mohana RayInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Miguel BrownInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Kori KirbyInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Rajib K NandiThe Computer Science Department, Division of the Physical Sciences, The University of Chicago, Chicago, Illinois.
Tiha M LongDepartment of Medicine, The University of Chicago Medicine, Chicago, Illinois.
Samantha M SparrowInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Andrey UgolkovDivision of Hematology/Oncology, Feinberg School of Medicine, Northwestern University, Chicago, Illinois.
Wenan QiangCenter for Development Therapeutics, Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Evanston, Illinois.ORCID 0000-0001-5068-7128
Yilin ZhangTempus Labs, Chicago, Illinois.
Tonya BrunettiInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Hedy KindlerDepartment of Medicine, The University of Chicago Medicine, Chicago, Illinois.
Jeremy P SegalDepartment of Pathology, The University of Chicago Medicine, Chicago, Illinois.
Andrey RzhetskyInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Andrew P MazarCenter for Development Therapeutics, Robert H. Lurie Comprehensive Cancer Center, Northwestern University, Evanston, Illinois.
Mary M BuschmannInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois.
Ralph WeichselbaumDepartment of Radiation and Cellular Oncology and the Ludwig Center for Metastasis, The University of Chicago Medicine, Chicago, Illinois.
Kevin RogginDepartment of Surgery, The University of Chicago Medicine, Chicago, Illinois. kpwhite@uchicago.edu kevin@tempus.com.
Kevin P WhiteInstitute for Genomic & Systems Biology, The University of Chicago, Chicago, Illinois. kpwhite@uchicago.edu kevin@tempus.com.
University of Chicago · USNorthwestern University · USTempus Labs (United States) · USUniversity of Illinois Chicago · US

Funding

Tumor Environment and Metastasis (TEAM) Research ProgramP30CA060553 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI Daniela E Matei · 1993 to 2026
$153.9M
Spatio-Temporal Organization of Chromatin and Information Transfer in CancerU54CA193419 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI MARKO, JOHN F · 2015 to 2020
$10.4M
NCI National Clinical Trials Network-Network Lead Academic Participating SitesU10CA180836 · NCI · UNIVERSITY OF CHICAGO · PI CHMURA, STEVEN J, KINDLER, HEDY L · 2014 to 2018
$3.2M
NCI NIH HHS P30 CA060553NCI NIH HHS U10 CA180836NCI NIH HHS U54 CA193419
6 · The paper itself

Abstract

Patient-derived pancreatic ductal adenocarcinoma (PDAC) organoid systems show great promise for understanding the biological underpinnings of disease and advancing therapeutic precision medicine. Despite the increased use of organoids, the fidelity of molecular features, genetic heterogeneity, and drug response to the tumor of origin remain important unanswered questions limiting their utility. To address this gap in knowledge, primary tumor- and patient-derived xenograft (PDX)-derived organoids, and 2D cultures for in-depth genomic and histopathologic comparisons with the primary tumor were created. Histopathologic features and PDAC representative protein markers (e.g., claudin 4 and CA19-9) showed strong concordance. DNA- and RNA-sequencing (RNAseq) of single organoids revealed patient-specific genomic and transcriptomic consistency. Single-cell RNAseq demonstrated that organoids are primarily a clonal population. In drug response assays, organoids displayed patient-specific sensitivities. In addition, the

Indexed as

AdenocarcinomaAnimalsHumansMiceOrganoidsPancreatic Neoplasms

Identifiers

PMID30171177
PMCPMC6647028
OpenAlexW2889176487

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.