Evidence map›Paper›PMID 30170307›Full record

ArticleJournal of inorganic biochemistry2018

A new approach to understanding structure-function relationships in cytochromes P450 by targeting terpene metabolism in the wild.

Nathan R Wong, Xinyue Liu, Hannah Lloyd, Allison M Colthart, Alexander E Ferrazzoli, Deani L Cooper, Yihao Zhuang, Phillix Esquea, Jeffrey Futcher, Theodore M Pochapsky and 2 more

Open access · greenAbstract read
In one paragraph

Article in Journal of inorganic biochemistry, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Nathan R WongDepartment of Biochemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Xinyue LiuDepartment of Chemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Hannah LloydDepartment of Biology, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Allison M ColthartDepartment of Biochemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Alexander E FerrazzoliDepartment of Biology, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Deani L CooperDepartment of Biology, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Yihao ZhuangDepartment of Biochemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Phillix EsqueaDepartment of Chemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Jeffrey FutcherDepartment of Chemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America.
Theodore M PochapskyMalden Catholic High School, 90 Crystal St., Malden, MA 02148, United States of America.
Jeffrey M MatthewsMalden Catholic High School, 90 Crystal St., Malden, MA 02148, United States of America.
Thomas C PochapskyDepartment of Biochemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America; Department of Chemistry, Brandeis University, 415 South St., Waltham, MA 02454-9110, United States of America. Electronic address: pochapsk@brandeis.edu.
Brandeis University · USMalden Public Schools · US

Funding

Macromolecular Structure MechanismT32GM007596 · NIGMS · BRANDEIS UNIVERSITY · PI OPRIAN, DANIEL D · 1985 to 2019
$4.5M
NIGMS NIH HHS T32 GM007596
6 · The paper itself

Abstract

A strategy for elucidating sequence determinants of function in the class of cytochrome P450 (CYP) enzymes that catalyze the first steps of terpene metabolism in wild microbiomes is described. Wild organisms that can use camphor, terpineol, pinene and limonene were isolated from soils rich in coniferous waste. Cell free extracts and growth beers were analyzed by gas chromatography/mass spectrometry to identify primary oxidative metabolites. For one organism, Pseudomonas nitroreducens TPJM, a cytochrome P450 (CYP108B1) isolated from cell free extracts was demonstrated to catalyze the oxidation of α-terpineol in assays combining the native ferredoxin and putidaredoxin reductase, and the resulting oxidation products identified by gas chromatography/mass spectrometry. Shotgun sequencing of PnTPJM identified four candidate P450 genes, including an apparently fragmentary gene with a high degree of homology with the known enzyme CYP108 (P450

Indexed as

Soil MicrobiologyBacterial ProteinsCytochrome P-450 Enzyme SystemPseudomonasTerpenesBacterial ProteinsCytochrome P-450 Enzyme SystemTerpenes

Identifiers

PMID30170307
PMCPMC6258033
OpenAlexW2885933770

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.