Evidence map›Paper›PMID 30169630›Full record

ArticleHuman molecular genetics2018

Loss of LDAH associated with prostate cancer and hearing loss.

Benjamin B Currall, Ming Chen, Richard C Sallari, Maura Cotter, Kristen E Wong, Nahid G Robertson, Kathryn L Penney, Andrea Lunardi, Markus Reschke, Ann E Hickox and 19 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Human molecular genetics, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 13 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

29 authors at 8 institutions in 2 countries.

Benjamin B CurrallDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Ming ChenHarvard Medical School, Boston, MA, USA.
Richard C SallariComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Maura CotterCenter for Molecular Oncologic Pathology, Dana Farber Cancer Institute, Boston, MA, USA.
Kristen E WongDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Nahid G RobertsonDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Kathryn L PenneyHarvard Medical School, Boston, MA, USA.
Andrea LunardiHarvard Medical School, Boston, MA, USA.
Markus ReschkeHarvard Medical School, Boston, MA, USA.
Ann E HickoxHarvard Medical School, Boston, MA, USA.
Yanbo YinEaton-Peabody Laboratory, Massachusetts Eye and Ear Infirmary, Boston, MA, USA.
Garrett T WongDepartment of Neurology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Jacqueline FungCancer Research Institute, Department of Medicine and Pathology, Beth Israel Deaconess Medical Center, Boston, MA, USA.
Kerry K BrownDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Robin E WilliamsonDepartment of Genetics, Harvard Medical School, Boston, MA, USA.
Nicholas A Sinnott-ArmstrongComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Tammy KamminDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Andrew IvanovDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Cinthya J Zepeda-MendozaDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Jun ShenHarvard Medical School, Boston, MA, USA.
Bradley J QuadeHarvard Medical School, Boston, MA, USA.
Sabina SignorettiHarvard Medical School, Boston, MA, USA.
Kathleen S ArnosDepartment of Science, Technology, & Mathematics, Gallaudet University, Washington, DC, USA.
Alexander S BanksHarvard Medical School, Boston, MA, USA.
Nikolaos PatsopoulosHarvard Medical School, Boston, MA, USA.
M Charles LibermanHarvard Medical School, Boston, MA, USA.
Manolis KellisComputer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA.
Pier Paolo PandolfiHarvard Medical School, Boston, MA, USA.
Cynthia C MortonDepartment of Obstetrics, Gynecology and Reproductive Biology, Brigham and Women's Hospital, Boston, MA, USA.
Brigham and Women's Hospital · USBeth Israel Deaconess Medical Center · USBroad Institute · USMassachusetts Eye and Ear Infirmary · USHarvard University · USDana-Farber Cancer Institute · USGallaudet University · USMassachusetts Institute of Technology · US

Funding

SPORE In Prostate CancerP50CA092629 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Yu Chen, MICHAEL J MORRIS · 2001 to 2026
$63.0M
RAPID GENE DISCOVERYP01GM061354 · NIGMS · BRIGHAM AND WOMEN'S HOSPITAL · PI GUSELLA, JAMES F · 2001 to 2019
$24.3M
SINGLE-NEURON MARKING IN THE STUDY OF ABNORMAL COCHLEASR01DC000188 · NIDCD · MASSACHUSETTS EYE AND EAR INFIRMARY · PI Gabriel Corfas, M. Charles Liberman · 1989 to 2026
$15.1M
Imaging Core PlanP30DC005209 · NIDCD · MASSACHUSETTS EYE AND EAR INFIRMARY · PI LIBERMAN, M. CHARLES · 2002 to 2016
$12.0M
TRAINING GRANT IN GENETICST32GM007748 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI Anne O'Donnell-Luria, Louise Wilkins-Haug · 1985 to 2026
$12.0M
CLONING GENES INVOLVED IN HEARINGR01DC003402 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI MORTON, CYNTHIA CASSON · 1997 to 2012
$4.0M
Modulation of PPAR-gamma phosphorylation at S273 regulates insulin sensitivityK01DK093638 · NIDDK · DANA-FARBER CANCER INST · PI BANKS, ALEXANDER · 2012 to 2014
$430k
Understanding the Role of C2orf43 in Hearing LossF32DC012466 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI CURRALL, BENJAMIN B · 2013 to 2014
$103k
Hearing loss associated with chromosomal rearrangementsF31DC007540 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI BROWN, KERRY KOCHER · 2005 to 2007
$92k
Cytogenetic Approaches to Finding Auditory GenesF31DC005712 · NIDCD · BRIGHAM AND WOMEN'S HOSPITAL · PI WILLIAMSON, ROBIN E · 2002 to 2004
$89k
NCI NIH HHS P50 CA092629NIDCD NIH HHS F31 DC005712NIDCD NIH HHS F31 DC007540NIDCD NIH HHS F32 DC012466NIDCD NIH HHS P30 DC005209NIDCD NIH HHS R01 DC000188NIDCD NIH HHS R01 DC003402NIDDK NIH HHS K01 DK093638NIGMS NIH HHS P01 GM061354NIGMS NIH HHS T32 GM007748
6 · The paper itself

Abstract

Great strides in gene discovery have been made using a multitude of methods to associate phenotypes with genetic variants, but there still remains a substantial gap between observed symptoms and identified genetic defects. Herein, we use the convergence of various genetic and genomic techniques to investigate the underpinnings of a constellation of phenotypes that include prostate cancer (PCa) and sensorineural hearing loss (SNHL) in a human subject. Through interrogation of the subject's de novo, germline, balanced chromosomal translocation, we first identify a correlation between his disorders and a poorly annotated gene known as lipid droplet associated hydrolase (LDAH). Using data repositories of both germline and somatic variants, we identify convergent genomic evidence that substantiates a correlation between loss of LDAH and PCa. This correlation is validated through both in vitro and in vivo models that show loss of LDAH results in increased risk of PCa and, to a lesser extent, SNHL. By leveraging convergent evidence in emerging genomic data, we hypothesize that loss of LDAH is involved in PCa and other phenotypes observed in support of a genotype-phenotype association in an n-of-one human subject.

Indexed as

AdultAgedAnimalsGenome-Wide Association StudyGerm CellsHearing Loss, SensorineuralHumansMaleMiceMice, KnockoutPhenotypeProstatic NeoplasmsSerine ProteasesTranslocation, GeneticLD-associated hydrolase, mouseSerine Proteases

Identifiers

PMID30169630
PMCPMC6276829
OpenAlexW2889182746

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.