Evidence map›Paper›PMID 30169545›Full record

ArticlePLoS pathogens2018

Critical role for a promoter discriminator in RpoS control of virulence in Edwardsiella piscicida.

Kaiyu Yin, Yunpeng Guan, Ruiqing Ma, Lifan Wei, Bing Liu, Xiaohong Liu, Xiangshan Zhou, Yue Ma, Yuanxing Zhang, Matthew K Waldor and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2018. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 53 citations in OpenAlex.

  1. Virulence · 2025
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  7. Versatile lifestyles ofVirulence · 2022
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  13. σFrontiers in microbiology · 2021
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  14. Article
  15. Frontiers in microbiology · 2021
    Article
  16. Virulence · 2019
    Review
  17. Article
  18. Article
  19. Genome-Wide Identification of Fitness Factors in Seawater forApplied and environmental microbiology · 2019
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Kaiyu YinState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Yunpeng GuanState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Ruiqing MaState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Lifan WeiState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Bing LiuInstitut de Biotecnologia i Biomedicina, Dept. de Bioquímica i Biologia Molecular, Universitat Autònoma de Barcelona, Barcelona, Spain.ORCID 0000-0002-6018-998X
Xiaohong LiuState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Xiangshan ZhouState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Yue MaState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Yuanxing ZhangState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Matthew K WaldorState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.
Qiyao WangState Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, Shanghai, China.ORCID 0000-0002-7494-0869
East China University of Science and Technology · CNBrigham and Women's Hospital · USUniversitat Autònoma de Barcelona · ES

Funding

Vibrio cholerae intestinal colonization and vaccine developmentR01AI042347 · NIAID · TUFTS UNIVERSITY BOSTON · PI WALDOR, MATTHEW K · 1998 to 2025
$7.3M
Howard Hughes Medical Institute 063101NIAID NIH HHS R01 AI042347
6 · The paper itself

Abstract

Edwardsiella piscicida is a leading fish pathogen that causes significant economic loses in the aquaculture industry. The pathogen depends on type III and type VI secretion systems (T3/T6SS) for growth and virulence in fish and the expression of both systems is controlled by the EsrB transcription activator. Here, we performed a Tn-seq-based screen to uncover factors that govern esrB expression. Unexpectedly, we discovered that RpoS antagonizes esrB expression and thereby inhibits production of E. piscicida's T3/T6SS. Using in vitro transcription assays, we showed that RpoS can block RpoD-mediated transcription of esrB. ChIP-seq- and RNA-seq-based profiling, as well as mutational and biochemical analyses revealed that RpoS-repressed promoters contain a -6G in their respective discriminator sequences; moreover, this -6G proved critical for RpoS to inhibit esrB expression. Mutation of the RpoS R99 residue, an amino acid that molecular modeling predicts interacts with -6G in the esrB discriminator, abolished RpoS' capacity for repression. In a turbot model, an rpoS deletion mutant was attenuated early but not late in infection, whereas a mutant expressing RpoSR99A exhibited elevated fitness throughout the infection period. Collectively, these findings deepen our understanding of how RpoS can inhibit gene expression and demonstrate the temporal variation in the requirement for this sigma factor during infection.

Indexed as

Fish DiseasesAnimalsAquacultureBacterial ProteinsEdwardsiellaEnterobacteriaceae InfectionsFlatfishesGene Expression Regulation, BacterialPromoter Regions, GeneticProtein BindingSigma FactorVirulenceBacterial ProteinsSigma Factorsigma factor KatF protein, Bacteria

Identifiers

PMID30169545
PMCPMC6136808
OpenAlexW2889285014

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.